prot_E-siliculosus-1a_M_contig75.15651.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15651.1
Unique Nameprot_E-siliculosus-1a_M_contig75.15651.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length306
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: D7FWM8_ECTSI (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM8_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 9.460e-113
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 305
            +YTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP
Sbjct:   65 EYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 233          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A836CDG2_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG2_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.080e-72
Identity = 113/163 (69.33%), Postives = 135/163 (82.82%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 299
            +YT  CS LI+Q+KDAES L+++G IT+T  FI E+Q+D PYAM+RLVKYGVPATVLHR  DE D I RARQAAETTQCFITAMDALKL+QRAVDEVQPLI D+ DRLNK +GLP  +EG +  R WL+T N +RA+D+L ++Q RQLLHDLD SYSAFFR+L
Sbjct:   77 EYTSRCSDLIAQFKDAESTLVSEGHITNTSAFIVEFQMDVPYAMERLVKYGVPATVLHRNHDEHDAISRARQAAETTQCFITAMDALKLDQRAVDEVQPLISDVMDRLNKCEGLPEGFEGVKTMRAWLITFNGLRASDQLDDEQVRQLLHDLDVSYSAFFRFL 239          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A6S9EJI3_HETAK (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EJI3_HETAK)

HSP 1 Score: 191 bits (485), Expect = 2.590e-56
Identity = 101/166 (60.84%), Postives = 120/166 (72.29%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQL-DCPYAMDRLVKYGVPATVLHRQVDERDQIG-RARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 300
            +Y REC+ LI Q+KD ES L+    IT T  FI  + L DC  A +RL+ YGVPATV+HR  D +  +  +ARQAAE TQ FITAMDALKLEQRAVDEVQPL+ D+ DRL ++  LP D+  TQK   WL  LN +RAADEL EDQARQLLHDLD +YS FFR+LE
Sbjct:   71 EYARECTTLIQQFKDTESVLIRQNYITDTSSFIAAWGLGDCALAAERLLTYGVPATVVHRSGDGQAGLALQARQAAEATQAFITAMDALKLEQRAVDEVQPLVADVMDRLTRLAALPADFAPTQKIEAWLKELNGLRAADELGEDQARQLLHDLDAAYSGFFRFLE 236          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A7S1FP92_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP92_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.650e-52
Identity = 90/165 (54.55%), Postives = 122/165 (73.94%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHR-QVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 300
            +YT EC  LISQ++  E+AL+ +G+I S+ +FI+EYQ++CP A+DRL++ GVPAT LH+ Q +E      A + AE  Q FITAMDALKL+QRAVDEVQPL+ DL D L +V GLP +++     + WL+ LNAMRA DE+ EDQARQL  +LDT+Y+ F R+L+
Sbjct:   55 EYTTECLKLISQFRSTETALIKNGTIRSSEEFIQEYQMECPRAVDRLLRTGVPATTLHQTQANEGAASNEAVRVAECVQHFITAMDALKLDQRAVDEVQPLLSDLMDSLTRVSGLPANFDPVDMLKRWLIKLNAMRAVDEIDEDQARQLSFELDTAYAGFHRFLK 219          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A812XGV8_SYMMI (Vps28 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XGV8_SYMMI)

HSP 1 Score: 177 bits (450), Expect = 9.280e-51
Identity = 93/164 (56.71%), Postives = 118/164 (71.95%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 299
            +Y+  C+ L+SQ+K  ESAL+  G ITS   F++EY +DCP A DRL++ GVPATV+H   D+R D +      AET Q FITAMDALKLEQRAVDEVQPL+ +L   L +V GLP D+EG  K R WL  LN MRA +ELS+++ARQL+ DL+ +YSAF RYL
Sbjct:  101 EYSESCTRLLSQFKGTESALITGGMITSAEIFMREYNIDCPRAYDRLIRAGVPATVMHMSHDDRADSVI----VAETVQAFITAMDALKLEQRAVDEVQPLLAELMSALTRVAGLPADFEGLVKMRLWLQKLNQMRAVEELSDEEARQLIFDLEGAYSAFHRYL 260          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: W7T9L8_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9L8_9STRA)

HSP 1 Score: 169 bits (429), Expect = 6.040e-48
Identity = 87/163 (53.37%), Postives = 118/163 (72.39%), Query Frame = 0
Query:  138 YTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 300
            YT  CS LISQ+K  E+A+LA  ++     F+ EY +DCP A++RL++ GVP+TVL+  VD  D  G A + AET Q FITAMD ++LEQRAVDE+QP++ D+   L +V GLP ++ G++K  EWLVTLNAMRA D ++E+QARQLL DLD  YS+F  +L+
Sbjct:   78 YTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVD--DGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: W2JRS1_PHYPR (Vacuolar protein sorting-associated protein 28 homolog n=23 Tax=Phytophthora TaxID=4783 RepID=W2JRS1_PHYPR)

HSP 1 Score: 160 bits (404), Expect = 2.750e-44
Identity = 84/164 (51.22%), Postives = 110/164 (67.07%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 299
            +YT  C+ LISQYK AE+AL   G I S   FI EY+LDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L  V GLP D+ G  K   WL T+N+MRA++EL E+QARQL  DL+ +YS+F  +L
Sbjct:   74 EYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVHNTTNRKTDSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFL 233          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A5D6XFV6_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFV6_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.150e-44
Identity = 81/164 (49.39%), Postives = 110/164 (67.07%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 299
            +YT  C+ LISQYK AE+AL   G + +   F+ +Y+LDCP A++RLV+ GVPATV+H     + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L +V GLP D++G  K   WL TLN +RA+DEL +DQARQL  DL+ +YS+F  +L
Sbjct:   68 EYTEACTKLISQYKTAENALRLGGHLPNIEAFLAQYRLDCPRALERLVRIGVPATVVHNTTSRKTDSVN----VAQTVQSFITVMDVLKLNIRAVDEIQPLVSEMMASLTQVSGLPPDFDGRAKIEGWLRTLNGLRASDELDDDQARQLSFDLERAYSSFMAFL 227          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A2D4C4W2_PYTIN (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4W2_PYTIN)

HSP 1 Score: 157 bits (398), Expect = 1.930e-43
Identity = 81/164 (49.39%), Postives = 111/164 (67.68%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 299
            +YT  C+ LISQ+K AE+AL   G +     FI +Y+LDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L +V GLP D++G  K   WL TLN++RA+DEL +DQARQL  DL+ +YS+F  +L
Sbjct:   70 EYTETCTKLISQFKTAETALRLGGFLDDIEAFISQYRLDCPRALERLVRIGVPATVVHNSTNRKADSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLCEMMTSLTQVSGLPADFQGRDKMEGWLRTLNSLRASDELDDDQARQLSFDLERAYSSFMAFL 229          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Match: A0A484ED39_BRELC (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED39_BRELC)

HSP 1 Score: 156 bits (395), Expect = 8.470e-43
Identity = 84/164 (51.22%), Postives = 109/164 (66.46%), Query Frame = 0
Query:  137 QYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 299
            +YT  C+ LISQ+K AE+AL   G I S  +FI EYQLDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L  V GLP D+    K  +WL T+NAM A+DEL E QARQL  DL+ +YS+F  +L
Sbjct:   86 EYTEACTKLISQFKTAETALRLGGFIESVENFIAEYQLDCPRALERLVRIGVPATVVHNTTNRKTDSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVRGLPADFSKRDKIEDWLRTMNAMGASDELDEVQARQLSFDLERAYSSFMAFL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15651.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM8_ECTSI9.460e-11399.41Vacuolar protein sorting-associated protein 28 hom... [more]
A0A836CDG2_9STRA1.080e-7269.33Vacuolar protein sorting-associated protein 28 hom... [more]
A0A6S9EJI3_HETAK2.590e-5660.84Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7S1FP92_9STRA4.650e-5254.55Vacuolar protein sorting-associated protein 28 hom... [more]
A0A812XGV8_SYMMI9.280e-5156.71Vps28 protein n=1 Tax=Symbiodinium microadriaticum... [more]
W7T9L8_9STRA6.040e-4853.37Vacuolar protein sorting-associated protein 28 hom... [more]
W2JRS1_PHYPR2.750e-4451.22Vacuolar protein sorting-associated protein 28 hom... [more]
A0A5D6XFV6_9STRA9.150e-4449.39Vacuolar protein sorting-associated protein 28 hom... [more]
A0A2D4C4W2_PYTIN1.930e-4349.39Vacuolar protein sorting-associated protein 28 hom... [more]
A0A484ED39_BRELC8.470e-4351.22Vacuolar protein sorting-associated protein 28 hom... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037206VPS28, C-terminal domain superfamilyGENE3D1.20.120.1130coord: 202..301
e-value: 5.4E-35
score: 121.3
IPR037206VPS28, C-terminal domain superfamilySUPERFAMILY140427VPS28 C-terminal domain-likecoord: 206..299
IPR038358VPS28, N-terminal domain superfamilyGENE3D1.20.1440.200coord: 133..192
e-value: 3.7E-8
score: 35.5
IPR007143Vacuolar protein sorting-associated Vps28PFAMPF03997VPS28coord: 137..299
e-value: 2.3E-49
score: 167.7
IPR007143Vacuolar protein sorting-associated Vps28PANTHERPTHR12937VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28coord: 137..300
IPR017898Vacuolar protein sorting-associated, VPS28, N-terminalPROSITEPS51313VPS28_Ncoord: 137..194
score: 8.46
IPR017899Vacuolar protein sorting-associated, VPS28, C-terminalPROSITEPS51310VPS28_Ccoord: 204..300
score: 38.203
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 137..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:542688..545051 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15651.1mRNA_E-siliculosus-1a_M_contig75.15651.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig75 542470..545584 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15651.1 ID=prot_E-siliculosus-1a_M_contig75.15651.1|Name=mRNA_E-siliculosus-1a_M_contig75.15651.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=306bp
MSQPRLTRLVPTKIYDDSSKLEGQPRRLVEPSFFSNRNQTMKLLEWSNGL
ISVAEVVRPTFVWLVPRNPVAPVFFSRADAIPTLTATHPPPPPNRRRGCF
LRRRVSCLTPFSLATTPARCLSCGGVRRCYLLLCGWQYTRECSALISQYK
DAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER
DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGL
PNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE
MTQKP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037202ESCRT_assembly_dom
IPR017899VPS28_C
IPR017898VPS28_N
IPR007143Vps28
IPR038358VPS28_N_sf
IPR037206VPS28_C_sf