prot_E-siliculosus-1a_M_contig75.15650.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15650.1
Unique Nameprot_E-siliculosus-1a_M_contig75.15650.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length43
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15650.1 vs. uniprot
Match: D7FWM8_ECTSI (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM8_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 1.590e-5
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 0 
Query:    1 MASGYPNSPPAGLARQSSDLDVRQNYIEYSEEHR 34
            MASGYPNSPPAGLARQSSDLD   +    + E R
Sbjct:    1 MASGYPNSPPAGLARQSSDLDDEVSLYSNARERR 34
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM8_ECTSI1.590e-567.65Vacuolar protein sorting-associated protein 28 hom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:541402..541530 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15650.1mRNA_E-siliculosus-1a_M_contig75.15650.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig75 541386..541800 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15650.1 ID=prot_E-siliculosus-1a_M_contig75.15650.1|Name=mRNA_E-siliculosus-1a_M_contig75.15650.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=43bp
MASGYPNSPPAGLARQSSDLDVRQNYIEYSEEHRLLRTGNTR*
back to top