prot_E-siliculosus-1a_M_contig75.15612.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig75.15612.1
Unique Name	prot_E-siliculosus-1a_M_contig75.15612.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	228

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 8.040e-124
Identity = 182/214 (85.05%), Postives = 197/214 (92.06%), Query Frame = 0

Query:   10 FLGTAATLITYASGFVAPMAAWSVAPATATLSSLKMTAGSDYVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            FLGTAATLI  ++ FVAPMA  S APA++  S+LKM+AGSDYVATLPGAPF DGKIFDPL L+DGAE G+IKLWREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISA+FPEFWAFSLLGMA IEYNTITKAYAEPS VTGEGGLRD+YSPGDLGFDPLNLKPKDQA LE MQTKELNNGRLAMIGIAGMLVQELVNP +IL
Sbjct:    8 FLGTAATLIASSTAFVAPMAVRSAAPASSA-SALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 1.850e-115
Identity = 169/214 (78.97%), Postives = 191/214 (89.25%), Query Frame = 0

Query:   10 FLGTAATLITYASGFVAPMAAWSVAPATATLSSLKMTAGSDYVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            FLG+AATLI  ++ FVAPMA  S APA+++ S+LKM+AGSDYVATLPGAPF DGKIFDPL L+DGA+  DIK WREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISA++PEFW FSLLGMA IEYNTI  A+  PS VTGEGGL++DY PGDLGFDPLNLKP+D+AAL+ M+TKELNNGRLAMIGIAGMLVQEL+NP +IL
Sbjct:    7 FLGSAATLIASSTAFVAPMAVRSAAPASSS-SALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 1.580e-110
Identity = 170/223 (76.23%), Postives = 190/223 (85.20%), Query Frame = 0

Query:    1 MIYSQVTVTFLGTAATLITYASGFVAPMAAWSVAPATATLSSLKMTAGSDYVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            M+ SQ+   FLGTAA LI  ++ FVAP+A  S APA+A  S+LKM+AGSDYVATLPGAPFSDGKIFDPL L+DGA  GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAFSLLGMA IEYNTI  A+  PS VTGEGGL++DY PGDLGFDPLNLKP  +AAL+ M+TKELNNGRLAMIGIAGML QELVN  +IL
Sbjct:    1 MVASQM---FLGTAAALIASSTAFVAPVAVRSAAPASAA-SALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 2.600e-110
Identity = 157/164 (95.73%), Postives = 159/164 (96.95%), Query Frame = 0

Query:   64 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINILDFLH 227
            KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLL +ALIEYNTITKAYAEPSFVTGEGGLRD+YSPGDLGFDPLNLKP DQ ALETMQTKELNNGRLAMIGIAG LVQELVNP NILDFLH
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.490e-109
Identity = 166/214 (77.57%), Postives = 188/214 (87.85%), Query Frame = 0

Query:   10 FLGTAATLITYASGFVAPMAAWSVAPATATLSSLKMTAGSDYVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            FLGTAATLI  ++ FV PMA  S APA++  S+LKM+AG+DY+ATLPGA   +GKIFD L LADGA+ G+IKLWREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMA IEYNTI KAYAEPS VTGEGGLRD+YSPGDLGFDP  +KPKDQA LE MQ KELNNGRLAMIGI GMLVQELVN  +IL
Sbjct:    8 FLGTAATLIASSAAFVTPMAVRSAAPASSA-SALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.100e-92
Identity = 133/160 (83.12%), Postives = 146/160 (91.25%), Query Frame = 0

Query:   64 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            +IFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLLGMA +EYNTI  A+  PS VTGEGGL++DY PGDLGFDPLNLKP D+AAL+ M+TKELNNGRLAMIGIAGML QELVNP +IL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 3.190e-90
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 0

Query:   64 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            +IFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLLGMA IEYNTI  A+  PS VTGEGGL++DY PGDLGFDPLNLKP D+AAL+ M+TKELNNGRLAMIGIAGML QELVNP +IL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.420e-87
Identity = 152/225 (67.56%), Postives = 167/225 (74.22%), Query Frame = 0

Query:    1 MIYSQVTVTFLGTAATLITYASGFVAPMAAWSVAPATATLSS--LKMTAGSDYVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINIL 223
            M+ SQ+   F+GTAATLI  ++ FVAPMA  SV   T T SS  LKM+AGSDYVATLPGAPFSDGKIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMA IEYNTI  A+  PS VTGEGGL++DY PGDLGFDPLNLKP D+AAL+ M+TKELNNGRLAMIGIAGML QELVNP +IL
Sbjct:    1 MVASQM---FIGTAATLIASSTAFVAPMAVRSV---TTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 7.520e-84
Identity = 123/184 (66.85%), Postives = 152/184 (82.61%), Query Frame = 0

Query:   39 TLSSLKMTAGSDYVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINI 222
            T ++ +M+AGSDYV+TLPGAPF+DGK++DP+GL+  A+  DIK WREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+ARFP+FWA +LL +A +EY  I   +AE   VTGEGG+R DY PGDLGFDPL L P+D+  L  M+TKELN+GRLAMIGI GM+VQELV P+ I
Sbjct:   86 TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 7.650e-75
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query:  112 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTITKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNPINILDFLH 227
            MGPDYIGPAVDHFQEISARFPEFWAFSLLGM LIEYNTITKAYAEPSFVTGEGGLRDDYS GDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVN INILDFLH
Sbjct:    1 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINILDFLH 116

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig75.15612.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7S1_ECTSI	8.040e-124	85.05	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	1.850e-115	78.97	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.580e-110	76.23	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	2.600e-110	95.73	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	1.490e-109	77.57	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.100e-92	83.13	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	3.190e-90	83.75	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K8D0_9PHAE	1.420e-87	67.56	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G5B4_ECTSI	7.520e-84	66.85	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5L7D2_9PHAE	7.650e-75	97.41	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 44..227 e-value: 1.2E-35 score: 125.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..215 e-value: 9.4E-37 score: 127.0
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 14..218
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 14..218
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..35
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..227
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..35
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 62..226
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig75	contig	E-siliculosus-1a_M_contig75:142539..144994 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig75.15612.1	mRNA_E-siliculosus-1a_M_contig75.15612.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig75 142173..145044 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15612.1 ID=prot_E-siliculosus-1a_M_contig75.15612.1|Name=mRNA_E-siliculosus-1a_M_contig75.15612.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=228bp
MIYSQVTVTFLGTAATLITYASGFVAPMAAWSVAPATATLSSLKMTAGSD
YVATLPGAPFSDGKIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLG
VLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLGMALIEYNTI
TKAYAEPSFVTGEGGLRDDYSPGDLGFDPLNLKPKDQAALETMQTKELNN
GRLAMIGIAGMLVQELVNPINILDFLH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf