prot_E-siliculosus-1a_M_contig75.15606.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15606.1
Unique Nameprot_E-siliculosus-1a_M_contig75.15606.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length546
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15606.1 vs. uniprot
Match: A0A6H5L180_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L180_9PHAE)

HSP 1 Score: 537 bits (1383), Expect = 7.380e-181
Identity = 524/549 (95.45%), Postives = 529/549 (96.36%), Query Frame = 0
Query:    1 MQFTNLGMASSRHCDIHLTVEVCEQARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQNSLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCDIALEVLRLNEELGLDAVPKMYAMALEVCITAGDYEASTTALDKMTAAGFQPRPDQEKRMLRSCADPQWISKRHSSRELERVEEEGEGE----GGDAQTDFWQERDEEQGFSRREA 545
            MQFTNLGMASSRHCDIHLTVEVCEQARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQ SLFAYNALISGCASGRGYERALGYFDDMRKAGV P+EMTFASIIATIRDGS GSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCD+ALEVLRLNEELGLDAVPKMYAMALEVCI AGD EASTTALDKMTAAGFQPRPDQEKRMLRSCADPQWISKRHSS E +RVEE GEG     GGD +TDFWQ RDEEQGF +REA
Sbjct:  223 MQFTNLGMASSRHCDIHLTVEVCEQARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQKSLFAYNALISGCASGRGYERALGYFDDMRKAGVGPNEMTFASIIATIRDGSAGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCDVALEVLRLNEELGLDAVPKMYAMALEVCIAAGDNEASTTALDKMTAAGFQPRPDQEKRMLRSCADPQWISKRHSSGESQRVEE-GEGXXXXXGGDVRTDFWQARDEEQGFYQREA 770          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15606.1 vs. uniprot
Match: D7G7R2_ECTSI (Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R2_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 7.340e-139
Identity = 473/545 (86.79%), Postives = 476/545 (87.34%), Query Frame = 0
Query:    1 MQFTNLGMASSRHCDIHLTVEVCEQARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQNSLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCDIALEVLRLNEELGLDAVPKMYAMALEVCITAGDYEASTTALDKMTAAGFQPRPDQEKRMLRSCADPQWISKRHSSRELERVEEEGEGEGGDAQTDFWQERDEEQGFSRREA 545
            MQFTNLGMASSRHCDIHLTVEV EQ                                                            HHIAAETMRTEGLQ SLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCDIALEVLRLNEELGLDAVPKMYAMALEVCITAGDYEAST ALDKMTAAGF+PRPDQEKRMLRSCADPQWISKRHS  EL+RVEEEGEGEG D  TDFWQ+RDEEQGF RREA
Sbjct:  130 MQFTNLGMASSRHCDIHLTVEVIEQ------------------------------------------------------------HHIAAETMRTEGLQKSLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDARRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCDIALEVLRLNEELGLDAVPKMYAMALEVCITAGDYEASTIALDKMTAAGFEPRPDQEKRMLRSCADPQWISKRHSPGELQRVEEEGEGEGRDVPTDFWQDRDEEQGFHRREA 614          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15606.1 vs. uniprot
Match: A0A7S2V5L7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5L7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.200e-21
Identity = 64/208 (30.77%), Postives = 109/208 (52.40%), Query Frame = 0
Query:    5 NLGMASSRHCDIHLTVEVCEQARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQNSLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGS-----------------------PERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQ 189
            N  +A S   D+   V  C +    GI  +V  +T ++  A + RRW++  QLL  M  +G  P+ +T+  V++ M+KAK++ +  +  +TE +Q +   +NA+ISGC+S   + RA  +++ M  AG+EP+ +T+ S+I   + G  G+                        ERA    + MK  G++PD YC N++MAV ++A Q
Sbjct:  171 NKCVAQSNIADLKQVVTRCSK---YGIRMNVHTLTQILQMACKRRRWMLVAQLLAWMHESGWAPSSMTHCVVVAEMAKAKEYRLIKDLCKTERVQLNKDHFNAIISGCSSTGDFCRAFQFYETMITAGLEPNVLTYNSLIGACKQGVVGAISRGKRGQNVFRGASCADSVEDLAERAFGYFEEMKTRGIQPDEYCFNTLMAVCIKAGQ 375          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15606.1 vs. uniprot
Match: A8P7Q0_COPC7 (Pentatricopeptide repeat protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=A8P7Q0_COPC7)

HSP 1 Score: 63.5 bits (153), Expect = 9.210e-7
Identity = 37/126 (29.37%), Postives = 71/126 (56.35%), Query Frame = 0
Query:   25 QARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQNSLFA-----YNALISGCASGR-GYERALGYFDDMRKAGVEPDEMTFASII 144
            +A  VG+TP++    N+++  S++R+   AL+L   MR  G  P+ +TY +V+   ++     ++AET+  E ++ + F      YN ++    + +   ERAL Y+++M+KAGV P   T+  ++
Sbjct: 1350 EAMRVGVTPNLYLFNNIISKLSRARKADYALELFHTMREQGIVPSSITYGAVIGACARVGDV-VSAETLFREMVEQTNFKPRVPPYNTMMQVYTTTKPDRERALWYYEEMKKAGVHPTAHTYKLLL 1474          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15606.1 vs. uniprot
Match: UPI000CE2390F (pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE2390F)

HSP 1 Score: 57.0 bits (136), Expect = 1.780e-5
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 0
Query:   26 ARLVGITPDVRFMTNLVNAASQSRRWVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEG-------LQNSLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDGSEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQAR 188
            A+  GI  DV   + ++ A  +     +A  LL+ MR  G  P E TYT V+    K   H    E +R +          N + A N +   C  G   + AL  F+ + +  + P+++T++ +I     G  G+ ERA E    MKE G++P  + +NS++   +++R
Sbjct:   36 AKAKGIELDVEVCSIVIQAVCKRPNLSLAFVLLKGMREMGWVPLEGTYTCVIGACVK---HGNMVEALRLKDEMVSCGKSMNLVVATNLMKGYCVQGN-LDSALDLFNRIGEDVLSPNKVTYSVLIEWC--GKNGTMERAYELYTQMKEKGIQPSVFNVNSLILGFLKSR 199          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L180_9PHAE7.380e-18195.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7R2_ECTSI7.340e-13986.79Pentatricopeptide repeat-containing protein, putat... [more]
A0A7S2V5L7_9STRA2.200e-2130.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A8P7Q0_COPC79.210e-729.37Pentatricopeptide repeat protein n=1 Tax=Coprinops... [more]
UPI000CE2390F1.780e-527.65pentatricopeptide repeat-containing protein At3g54... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 3..150
e-value: 2.7E-25
score: 91.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 151..220
e-value: 3.6E-15
score: 57.8
coord: 221..323
e-value: 5.2E-30
score: 106.1
coord: 324..432
e-value: 2.1E-14
score: 55.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 303..359
e-value: 0.0036
score: 17.3
coord: 28..79
e-value: 0.0016
score: 18.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 172..219
e-value: 5.1E-9
score: 36.2
coord: 103..144
e-value: 1.7E-8
score: 34.5
coord: 242..290
e-value: 5.7E-13
score: 48.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 210..244
e-value: 0.0028
score: 15.7
coord: 245..278
e-value: 1.9E-7
score: 28.8
coord: 104..137
e-value: 2.5E-7
score: 28.4
coord: 281..313
e-value: 1.7E-8
score: 32.1
coord: 41..70
e-value: 0.0017
score: 16.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 386..412
e-value: 1.3
score: 9.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 383..417
score: 7.958
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 34..68
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 136..172
score: 8.133
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 69..100
score: 5.053
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 243..277
score: 12.244
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 101..135
score: 11.477
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 313..347
score: 8.089
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 173..207
score: 8.703
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 278..312
score: 11.334
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 451..485
score: 7.059
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 348..382
score: 8.199
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 208..242
score: 10.019
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 27..181
coord: 153..233
coord: 186..413
coord: 377..485

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:107086..115424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15606.1mRNA_E-siliculosus-1a_M_contig75.15606.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig75 105982..119481 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15606.1 ID=prot_E-siliculosus-1a_M_contig75.15606.1|Name=mRNA_E-siliculosus-1a_M_contig75.15606.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=546bp
MQFTNLGMASSRHCDIHLTVEVCEQARLVGITPDVRFMTNLVNAASQSRR
WVMALQLLQLMRSNGTPPNEVTYTSVLSNMSKAKQHHIAAETMRTEGLQN
SLFAYNALISGCASGRGYERALGYFDDMRKAGVEPDEMTFASIIATIRDG
SEGSPERAIEAVQMMKEAGLRPDTYCMNSVMAVNVQARQPNAALKVFEEM
KRDDIPRDVVSYNTAISACDKLQDAETAVRLLRQAREDDVEPDVFSYNTA
ISALGHSCQWQEAARIFEEMNEAGVVPSLMTYNTLISGCVRAQAPSEALS
VFYLMKERGIKRDQYSFAGALHASVHLRDYELAMNLLEEMIDMGMPANSQ
SYATAIRTCARCSKSDEAVFLYASQLRMTIVPTEMTYKALVEAFTDCKDA
RRAAWVLDEMREMLVPIEHVHLMDVLYACTDQCDIALEVLRLNEELGLDA
VPKMYAMALEVCITAGDYEASTTALDKMTAAGFQPRPDQEKRMLRSCADP
QWISKRHSSRELERVEEEGEGEGGDAQTDFWQERDEEQGFSRREA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf