prot_E-siliculosus-1a_M_contig75.15599.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig75.15599.1
Unique Name	prot_E-siliculosus-1a_M_contig75.15599.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	164

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 3.940e-74
Identity = 111/130 (85.38%), Postives = 117/130 (90.00%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            +LATVGV+VAEQYHPFFMG DYIGPAV HFQEITA+FPQFWAYSL GMA IEYNTIK AY EPSP+TGEGGLR+EYSPGDLGFDP KIKPK+   L KMQNKELNNGRL MIGI GMLVQELVNGQDILG
Sbjct:   89 MLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.480e-67
Identity = 104/130 (80.00%), Postives = 112/130 (86.15%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            +LATVGVIVAEQYHP FMG DYIGPAV HFQEI+AQFP+FWA+SL GMA IEYNTI  AY EPSP+TGEGGLR+EYSPGDLGFDP  +KPK+   L KMQ KELNNGRL MIGIAGMLVQELVN  DILG
Sbjct:   92 MLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 9.150e-61
Identity = 93/130 (71.54%), Postives = 108/130 (83.08%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            +LA++GVIVAEQYHPFFMG DYIGPAV HFQEI+AQFP+FWA+SL GMA +EYNTI  A++ PS +TGEGGL+E+Y PGDLGFDP  +KP +   L  M+ KELNNGRL MIGIAGML QELVN  DILG
Sbjct:   67 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 5.960e-60
Identity = 93/129 (72.09%), Postives = 108/129 (83.72%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDIL 162
            +LA++GV+VAE+YHPFFMG DYIGPAV HFQEI+A+FP+FWA+SL  +ALIEYNTI  AY EPS +TGEGGLR+EYSPGDLGFDP  +KP +   L  MQ KELNNGRL MIGIAG LVQELVN  +IL
Sbjct:   46 MLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.590e-59
Identity = 91/130 (70.00%), Postives = 108/130 (83.08%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            +LA++GV+VAEQYHP FMG DYIGPAV HFQEI+AQ+P+FW +SL GMA IEYNTI  A+E PS +TGEGGL+E+Y PGDLGFDP  +KP++   L  M+ KELNNGRL MIGIAGMLVQEL+N  DILG
Sbjct:   91 MLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.030e-58
Identity = 89/129 (68.99%), Postives = 107/129 (82.95%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDIL 162
            +LA++G++VAE+YHP FMG D+IGPA+ HFQEI+AQFP+FWA+SL GMA IEYNTI  A++ PS +TGEGGL+E+Y PGDLGFDP  +KP     L  M+ KELNNGRL MIGIAGML QELVNGQDIL
Sbjct:   91 MLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.280e-58
Identity = 94/130 (72.31%), Postives = 108/130 (83.08%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            +LA++GVIVAEQYHPFFMG DYIGPAV HFQEI+AQFP+FWA+SL GMA IEYNTI  A++ PS +TGEGGL+E+Y PGDLGFDP  +KP +   L  M+ KELNNGRL MIGIAGML QELVN  DILG
Sbjct:  263 MLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.540e-50
Identity = 82/112 (73.21%), Postives = 92/112 (82.14%), Query Frame = 0

Query:   51 MGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDIL 162
            MG DYIGPAV HFQEI+A+FP+FWA+SL GM LIEYNTI  AY EPS +TGEGGLR++YS GDLGFDP  +KPK+   L  MQ KELNNGRL MIGIAGMLVQELVN  +IL
Sbjct:    1 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.640e-46
Identity = 81/131 (61.83%), Postives = 91/131 (69.47%), Query Frame = 0

Query:   51 MGLDYIGPAVGHFQEITAQFP------------------QFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            MG DYIGPAV HFQEI+AQFP                  QFWA+SL GMA IEYNTI  A++ PS +TGEGGL+E+Y PGDLGFDP  +KP +   L  M+ KELNNGRL MIGIAGML QELVN  DILG
Sbjct:    1 MGPDYIGPAVDHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131

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BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.990e-45
Identity = 75/130 (57.69%), Postives = 97/130 (74.62%), Query Frame = 0

Query:   34 LLATVGVIVAEQYHPFFMGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPITGEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGMLVQELVNGQDILG 163
            +LA+VGV+VAE +HP F+G DYIGPA+ HF+EITA+FPQFWA +L  +A +EY  I + + E  P+TGEGG+R +Y PGDLGFDP  + P++   L  M+ KELN+GRL MIGI GM+VQELV    I G
Sbjct:  142 MLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig75.15599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7S0_ECTSI	3.940e-74	85.38	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	1.480e-67	80.00	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	9.150e-61	71.54	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	5.960e-60	72.09	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	1.590e-59	70.00	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.030e-58	68.99	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	1.280e-58	72.31	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5L7D2_9PHAE	2.540e-50	73.21	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JVY1_9PHAE	3.640e-46	61.83	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G5B4_ECTSI	1.990e-45	57.69	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 34..154 e-value: 1.7E-17 score: 64.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 28..163 e-value: 4.7E-19 score: 70.9
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 35..158
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 35..162
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 35..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig75	contig	E-siliculosus-1a_M_contig75:40681..43372 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig75.15599.1	mRNA_E-siliculosus-1a_M_contig75.15599.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig75 40437..43961 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15599.1 ID=prot_E-siliculosus-1a_M_contig75.15599.1|Name=mRNA_E-siliculosus-1a_M_contig75.15599.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=164bp
MERSSTPSSWPMALSLEISSSGARPRSSTGVWLLLATVGVIVAEQYHPFF
MGLDYIGPAVGHFQEITAQFPQFWAYSLFGMALIEYNTIKMAYEEPSPIT
GEGGLREEYSPGDLGFDPEKIKPKNPVRLMKMQNKELNNGRLVMIGIAGM
LVQELVNGQDILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind