prot_E-siliculosus-1a_M_contig74.15564.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig74.15564.1
Unique Nameprot_E-siliculosus-1a_M_contig74.15564.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length305
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig74.15564.1 vs. uniprot
Match: A0A6H5JWU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU0_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 6.950e-65
Identity = 102/110 (92.73%), Postives = 105/110 (95.45%), Query Frame = 0 
Query:   49 MASDALPIAVAVEGKPTGTGVVCSIADEDDKAPLLVLHHHTNGRAWSRGDGGPWEGWGLQDPLERWSGVAAQGERVVGLKLYLCKLMGFIPQELGSLTCLLYLDLGRNQL 158
            MAS ALPIAVAVEGKPTG+GVVCSIADEDDKAPLLVLHHHTNGRAW RGDGGPWEGWGLQDPLERWSGVA +G RVVGLKLYLCKLMGFIP ELGSL+CLLYLDLGRNQL
Sbjct:    1 MASSALPIAVAVEGKPTGSGVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPWEGWGLQDPLERWSGVAVKGGRVVGLKLYLCKLMGFIPHELGSLSCLLYLDLGRNQL 110
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BLAST of mRNA_E-siliculosus-1a_M_contig74.15564.1 vs. uniprot
Match: A0A1I5A0G6_9FLAO (Leucine rich repeat-containing protein n=2 Tax=Bizionia TaxID=283785 RepID=A0A1I5A0G6_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 4.190e-6
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 0 
Query:   77 DDKAPLLVLHHHTNGRAWSRGDGGPWEGWGLQDPLERWSGVAAQGERVVGLKLYLCKLMGFIPQELGSLTCLLYLDLG 154
            ++KA L+ L++ TNG  W+         W L  P+E W GV  +  +VV + L    L G +PQE+G L  L YL+ G
Sbjct:   24 NEKAALVALYNSTNGSQWTHT-------WDLSAPVENWYGVTIKNNKVVEISLEFNNLQGILPQEIGDLVNLKYLNFG 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig74.15564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWU0_9PHAE6.950e-6592.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1I5A0G6_9FLAO4.190e-637.18Leucine rich repeat-containing protein n=2 Tax=Biz... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 169..192
e-value: 53.0
score: 7.3
coord: 193..217
e-value: 7.1
score: 14.5
coord: 145..168
e-value: 47.0
score: 7.7
coord: 241..266
e-value: 35.0
score: 8.8
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 171..191
e-value: 0.72
score: 10.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 233..304
e-value: 6.6E-16
score: 60.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 73..232
e-value: 1.4E-40
score: 140.8
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 186..302
coord: 122..254
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 186..302
coord: 122..254
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 122..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig74contigE-siliculosus-1a_M_contig74:640640..646909 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig74.15564.1mRNA_E-siliculosus-1a_M_contig74.15564.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig74 640640..646910 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig74.15564.1 ID=prot_E-siliculosus-1a_M_contig74.15564.1|Name=mRNA_E-siliculosus-1a_M_contig74.15564.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=305bp
PGTSLQHSSTNEQITRAEARTQGQPPSAIAKKSGGLRGNALHCWGATRMA
SDALPIAVAVEGKPTGTGVVCSIADEDDKAPLLVLHHHTNGRAWSRGDGG
PWEGWGLQDPLERWSGVAAQGERVVGLKLYLCKLMGFIPQELGSLTCLLY
LDLGRNQLFGSIPPEFGALRQLRTLDLYHNQLSGPIPEELGALSELRELS
LGSNQLTGSIPAALGRLGSLQVLRLTDNMLSGAIPCELGQLINLKVLKLN
GNELAAGEIPKELGSLSGLVSLWLNKNNLSGNIPQALGALHLLENLWLKD
NKELK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp