prot_E-siliculosus-1a_M_contig725.15440.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig725.15440.1
Unique Nameprot_E-siliculosus-1a_M_contig725.15440.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length48
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: E6ZER9_ECTSI (Ribosomal protein L2 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.830e-25
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A2H4ZQZ8_9PHAE (Ribosomal protein L2 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZQZ8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.750e-23
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPS TPWGKPTKG  TKRFRVQPKPNVKI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGKFTKRFRVQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A0U1XGN0_9PHAE (Ribosomal protein L2 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XGN0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.340e-22
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNP+DHPHGGGEGKTSGGRPS TPWGKPTKG  TKRFR+QPKPNVKI
Sbjct:  208 MNPVDHPHGGGEGKTSGGRPSVTPWGKPTKGKFTKRFRIQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A089N303_PETFA (Ribosomal protein L2 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089N303_PETFA)

HSP 1 Score: 94.4 bits (233), Expect = 1.880e-22
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNP+DHPHGGGEGKTSGGRPS TPWGKPTKG  TKRFRVQPKPNVKI
Sbjct:  208 MNPVDHPHGGGEGKTSGGRPSVTPWGKPTKGKSTKRFRVQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A3G5FPP3_9PHAE (Ribosomal protein L2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPP3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-21
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPS TPWGKPTKG  T+R+RVQPKPNVKI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGQSTRRYRVQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A1I9LW86_9PHAE (Ribosomal protein L2 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW86_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.040e-21
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPS TPWGKPTKG  T+RFRVQPKPN KI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGQPTRRFRVQPKPNAKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A8F0K125_9PHAE (Ribosomal protein L2 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K125_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.040e-21
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPS+TPWGKPTKG  T+R+R QPKPNVKI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSATPWGKPTKGPSTRRYRTQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: Q94Z04_PYLLI (Ribosomal protein L2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z04_PYLLI)

HSP 1 Score: 91.7 bits (226), Expect = 2.040e-21
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPS TPWGKPTKG  T+RFRV+PKPNVKI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGPSTRRFRVKPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: A0A8F0FDE7_9PHAE (Ribosomal protein L2 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FDE7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.040e-21
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNPIDHPHGGGEGKTSGGRPS TPWGKPTKG  T+R RVQPKPNVKI
Sbjct:  208 MNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGPSTRRIRVQPKPNVKI 254          
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Match: Q2TUF5_9PHAE (Ribosomal protein L2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 7.980e-21
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI 47
            MNP+DHPHGGGEGKTSGGRPS TPW KPTKG  T+RFR+QPKPNVKI
Sbjct:  208 MNPVDHPHGGGEGKTSGGRPSVTPWAKPTKGPSTRRFRIQPKPNVKI 254          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig725.15440.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZER9_ECTSI2.830e-25100.00Ribosomal protein L2 n=2 Tax=Ectocarpus siliculosu... [more]
A0A2H4ZQZ8_9PHAE6.750e-2393.62Ribosomal protein L2 n=2 Tax=Endarachne binghamiae... [more]
A0A0U1XGN0_9PHAE1.340e-2289.36Ribosomal protein L2 n=1 Tax=Colpomenia peregrina ... [more]
A0A089N303_PETFA1.880e-2291.49Ribosomal protein L2 n=2 Tax=Scytosiphonaceae TaxI... [more]
A0A3G5FPP3_9PHAE1.030e-2189.36Ribosomal protein L2 n=1 Tax=Cladosiphon okamuranu... [more]
A0A1I9LW86_9PHAE2.040e-2189.36Ribosomal protein L2 n=1 Tax=Pleurocladia lacustri... [more]
A0A8F0K125_9PHAE2.040e-2187.23Ribosomal protein L2 n=1 Tax=Chorda asiatica TaxID... [more]
Q94Z04_PYLLI2.040e-2189.36Ribosomal protein L2 n=1 Tax=Pylaiella littoralis ... [more]
A0A8F0FDE7_9PHAE4.040e-2189.36Ribosomal protein L2 n=2 Tax=Laminariales TaxID=28... [more]
Q2TUF5_9PHAE7.980e-2185.11Ribosomal protein L2 n=2 Tax=Desmarestia TaxID=313... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10coord: 1..46
e-value: 8.0E-16
score: 59.9
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 1..26
e-value: 3.5E-7
score: 30.4
NoneNo IPR availablePANTHERPTHR13691:SF3960S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL-RELATEDcoord: 1..36
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..36
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 1..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig725contigE-siliculosus-1a_M_contig725:9038..9181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig725.15440.1mRNA_E-siliculosus-1a_M_contig725.15440.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig725 8938..9192 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig725.15440.1 ID=prot_E-siliculosus-1a_M_contig725.15440.1|Name=mRNA_E-siliculosus-1a_M_contig725.15440.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=48bp
MNPIDHPHGGGEGKTSGGRPSSTPWGKPTKGLLTKRFRVQPKPNVKI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR002171Ribosomal_L2
IPR022669Ribosomal_L2_C
IPR014726Ribosomal_L2_dom3