prot_E-siliculosus-1a_M_contig72.15414.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15414.1
Unique Nameprot_E-siliculosus-1a_M_contig72.15414.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length734
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig72.15414.1 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 1042 bits (2695), Expect = 0.000e+0
Identity = 624/809 (77.13%), Postives = 647/809 (79.98%), Query Frame = 0
Query:    1 MARLSDSHNDDRGVGQRPPPRHHRGWQTRERTASGGARSPLRESPASNRDGSAADPRKASSSKSLRPYDIPYATGDSNAAAVNTTAGTTASAGAGKVPGGIDDKGIVLRC-----------------------------------MYTNQKTKKRKIWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KLFKAFKPPARREPTPARQPDDSWGRLPPGGGGLRGNGDRGGDGRFPSDRGGGQFSPRTTYTGFGHVESLWDEDEEEQ-GQDRREDRAGPAGQHGAGWGMGGAAGPGYQNPYDGGNESGVLREARSEAAVHPPYHRSNGTSAVGNTNAWMWGPPAGEHSLDGPPWPSPSTADFASGSPGQKQXXXXXXXXXXXXGG--------------------------RSASHYPENQRYGGDGAVTSAGGTSGTEESTFGRGDAIGGAGARVPEVVDRETPGDGARVEMRSTQDILSLFGGIGGPPSTQGGH--GSHERETAESQRHGPTEAPLGSQASGDTVMPVGVGIRRAADMRRAQKEARAAA--------TTAAPGGVASA---PNDDAVTGDWACGTCGVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVRVGIASQERRVEWGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGIAEGLEGEGAPGRWRSSSPDRPAFPQSGSGGGGEGACGGSELEPPSSCRKTGPRMQMDMGSSSDSDDA 733
            MARLSDSHN +RGVGQRPPP+HHRGWQ RERTASGGARSP RESPASNRDGSAA+PRKASSSKSLRP+DIPYATG+S AAAVNTTAGTTASA  GKVPGGIDDKGIVLRC                                   MYTNQKTKKRK WSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ DDNA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   K+FKAFKPPARREPTPA QPDDSWGRLPPGG  LRGNGDRGGDGRFPS+RGGG+ SPRTTYTGFGHVESLWDEDEEE  GQDR ED AG A +H AGWGMGGAAGPGYQNPYD GNES VL++ARSEAAV PPYHRS GTSAVG+TN WMWGPPAGEHSLDGP  PS STADFASGSP Q+Q             G                          RSASHYPENQR G DGAVT+AGGT G EE+TFGRG+AIGGAG+RV E VDRETPGDGAR+EMRSTQDILSLFGG GG PSTQGGH  G  ERETAESQ  GPTEAPLGSQASGD +MPVG GIRRA DMRR QKEARAA            A  G ASA    NDDAVTGDWACGTCGVRG  SSASCRVCGAKRQ LRSDGVAQGGDDGVR GI SQE RV WGRGDDFGGG R Q+KA EG AGDVGDRPV LGIAEGLE  GAPGRWR+SSPDRPAFPQSG+GGGGEGA GGS LE PSSCRK G RMQMDMGSSSDSD+A
Sbjct:    1 MARLSDSHNVERGVGQRPPPQHHRGWQARERTASGGARSPSRESPASNRDGSAANPRKASSSKSLRPHDIPYATGNSYAAAVNTTAGTTASAEPGKVPGGIDDKGIVLRCVDTGRPGYVCVETTANRVRFFLSDVALLPAVLPRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRKIFKAFKPPARREPTPAPQPDDSWGRLPPGGVSLRGNGDRGGDGRFPSNRGGGKLSPRTTYTGFGHVESLWDEDEEEDDGQDRHEDGAGLADEHRAGWGMGGAAGPGYQNPYDVGNESDVLQQARSEAAVQPPYHRSTGTSAVGSTNTWMWGPPAGEHSLDGPLRPSRSTADFASGSPAQQQQQERGRHDETAVPGHHGEDGPSSYLERLRRGNDDDDDVGRRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGSRVSEEVDRETPGDGARMEMRSTQDILSLFGGFGGTPSTQGGHDHGEQERETAESQWRGPTEAPLGSQASGDALMPVGGGIRRAVDMRRTQKEARAAXXXXXXXXXVAGAVTGAASARGASNDDAVTGDWACGTCGVRGGSSSASCRVCGAKRQELRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGERPQKKALEGRAGDVGDRPVILGIAEGLEA-GAPGRWRTSSPDRPAFPQSGAGGGGEGAFGGSVLETPSSCRKIGHRMQMDMGSSSDSDEA 808          
BLAST of mRNA_E-siliculosus-1a_M_contig72.15414.1 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 644 bits (1661), Expect = 4.840e-224
Identity = 400/700 (57.14%), Postives = 411/700 (58.71%), Query Frame = 0
Query:   47 SNRDGSAADPRKASSSKSLRPYDIPYATGDSNAAAVNTTAGTTASAGAGKVPGGIDDKGIVLRCMYTNQKTKKRKIWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLFKAFKPPARREPTPARQPDDSWGRLPPGGGGLRGNGDRGGDGRFPSDRGGGQFSPRTTYTGFGHVESLWDEDEEEQGQDRREDRAGPAGQHGAGWGMGGAAGPGYQNPYDGGNESGVLREARSEAAVHPPYHRSNGTSAVGNTNAWMWGPPAGEHSLDGPPWPSPSTADFASGSPGQKQXXXXXXXXXXXXGGRSASHYPENQRYGGDGAVTSAGGTSGTEESTFGRGDAIGGAGARVPEVVDRETPGDGARVEMRSTQDILSLFGGIGGPPSTQGGH--GSHERETAESQRHGPTEAPLGSQASGDTVMPVGVGIRRAADMRRAQKEARAAATTA-----------APGGVASAPNDDAVTGDWACGTCGVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVRVGIASQERRVEWGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGIAEGLEGEGAPGRWRSSSPDRPAFPQSGSGGGGEGACGGSELEPPSSCRKTGPRMQMDMGSSSDSDDA 733
            SNRDGSAADPRKASSSKSLRPYDIPYATG+SNAAAVNTTAGT ASA AGKVPGGIDDKGIVLRCMYTNQKTKKRK WSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMEL     DG                                                              DD+                                                                                                                                                                          GGRSASHYPENQR G DGAVT+AGGT G EE+TFGRG+AIGGAGARVPE VDRETPG  ARVEMRSTQDILSLFGG GG PSTQGGH  GSH RETAE+QRHGPTEAPLGSQASGD + PVG GIRRAADM RAQKEARAAA T                   APNDDAV GDW CGTCGVRGDPSSASCRVCGAKR+GLRSDGVAQGGDDGVR GI SQE RV WGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGIAEGLE  GAPGRWR+SSPDRPAFPQS +GGGGEGACG S LE PSSC+K GPRMQMDMGSSSDSDDA
Sbjct:   26 SNRDGSAADPRKASSSKSLRPYDIPYATGNSNAAAVNTTAGTAASAEAGKVPGGIDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELLRRGDDG--------------------------------------------------------------DDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGARVPEEVDRETPGYVARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSHGRETAETQRHGPTEAPLGSQASGDALRPVGGGIRRAADMHRAQKEARAAAATVXXXXXXXXXXTGASSARGAPNDDAVMGDWVCGTCGVRGDPSSASCRVCGAKREGLRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGIAEGLEAGGAPGRWRTSSPDRPAFPQSRAGGGGEGACGVSVLETPSSCQKIGPRMQMDMGSSSDSDDA 493          
BLAST of mRNA_E-siliculosus-1a_M_contig72.15414.1 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.970e-23
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0
Query:  107 VLRCMYTNQKTKKRKIWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ 188
            VLRC++T+Q TKKRK W DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME Y+V+L+GV +
Sbjct:   10 VLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTE 91          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZC9_9PHAE0.000e+077.13RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI4.840e-22457.14RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A835YK32_9STRA3.970e-2362.20DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018838Domain of unknown function DUF2439PFAMPF10382DUF2439coord: 109..187
e-value: 9.4E-9
score: 35.5
NoneNo IPR availableGENE3D4.10.1060.10coord: 573..611
e-value: 3.7E-6
score: 28.0
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 577..606
score: 8.739

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:692387..699090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15414.1mRNA_E-siliculosus-1a_M_contig72.15414.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig72 692387..699242 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig72.15414.1 ID=prot_E-siliculosus-1a_M_contig72.15414.1|Name=mRNA_E-siliculosus-1a_M_contig72.15414.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=734bp
MARLSDSHNDDRGVGQRPPPRHHRGWQTRERTASGGARSPLRESPASNRD
GSAADPRKASSSKSLRPYDIPYATGDSNAAAVNTTAGTTASAGAGKVPGG
IDDKGIVLRCMYTNQKTKKRKIWSDGAVKCCPKRQRVSLYRWSEALGVTE
KLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNASGGGAGS
AATPAQNTAATGVSAGGGTTAAAGKKRKLFKAFKPPARREPTPARQPDDS
WGRLPPGGGGLRGNGDRGGDGRFPSDRGGGQFSPRTTYTGFGHVESLWDE
DEEEQGQDRREDRAGPAGQHGAGWGMGGAAGPGYQNPYDGGNESGVLREA
RSEAAVHPPYHRSNGTSAVGNTNAWMWGPPAGEHSLDGPPWPSPSTADFA
SGSPGQKQQQERGRDDDDDAGGRSASHYPENQRYGGDGAVTSAGGTSGTE
ESTFGRGDAIGGAGARVPEVVDRETPGDGARVEMRSTQDILSLFGGIGGP
PSTQGGHGSHERETAESQRHGPTEAPLGSQASGDTVMPVGVGIRRAADMR
RAQKEARAAATTAAPGGVASAPNDDAVTGDWACGTCGVRGDPSSASCRVC
GAKRQGLRSDGVAQGGDDGVRVGIASQERRVEWGRGDDFGGGGRRQEKAS
EGGAGDVGDRPVTLGIAEGLEGEGAPGRWRSSSPDRPAFPQSGSGGGGEG
ACGGSELEPPSSCRKTGPRMQMDMGSSSDSDDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR018838DUF2439