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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig72.15365.1 vs. uniprot
Match: A0A6H5JAI1_9PHAE (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAI1_9PHAE) HSP 1 Score: 315 bits (808), Expect = 6.130e-93 Identity = 168/188 (89.36%), Postives = 176/188 (93.62%), Query Frame = 0
Query: 1 MGLPARGRMPAWLEHIAIAVTLACCTCAGDGFTGLSSAVDKSSCAFGLQGAMPTHSACSNSELMAKNCRTHRHSRRDGGSTRQLSGTRVPCELDAGAVDAGVSGEATRLGVLSRRGEGPLESSTRSRGAASRRGKSKSLVKLKSILLEAKGGDLRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQ 188
MGLPARG M AWLE IAIAVTLACCTCAGDGFTGLSSA+DKSSCAFGLQGAMPTHS CS+SELMAKN RT+RHSRR+ GSTR LSGTR+PCELDAGAVDAGVSGEATRLGVLSR+GEGPLESSTRSRGAA R GKSKSLVKLKS LLEAK GD RTALAALDEFKISGG+LDTTSYNIAIAACSNG+Q
Sbjct: 1 MGLPARGSMFAWLERIAIAVTLACCTCAGDGFTGLSSAIDKSSCAFGLQGAMPTHSTCSDSELMAKNSRTYRHSRRERGSTRHLSGTRMPCELDAGAVDAGVSGEATRLGVLSRKGEGPLESSTRSRGAARRGGKSKSLVKLKSTLLEAKDGDWRTALAALDEFKISGGNLDTTSYNIAIAACSNGKQ 188
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 358..467
e-value: 5.7E-36
score: 125.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 238..345
e-value: 1.3E-35
score: 125.4
coord: 145..237
e-value: 9.5E-22
score: 79.9
coord: 653..750
e-value: 2.0E-28
score: 101.8 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 469..652
e-value: 3.6E-56
score: 192.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | SUPERFAMILY | 48452 | TPR-like | coord: 219..375 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 526..560
e-value: 6.1E-8
score: 30.4
coord: 701..735
e-value: 6.6E-7
score: 27.1
coord: 596..630
e-value: 4.5E-5
score: 21.3
coord: 281..314
e-value: 6.4E-8
score: 30.3
coord: 317..349
e-value: 2.2E-7
score: 28.6
coord: 561..595
e-value: 9.7E-8
score: 29.7
coord: 175..208
e-value: 2.1E-5
score: 22.4
coord: 456..489
e-value: 1.9E-6
score: 25.7
coord: 631..665
e-value: 6.2E-6
score: 24.1
coord: 351..385
e-value: 1.5E-9
score: 35.4
coord: 209..235
e-value: 1.3E-5
score: 23.1
coord: 666..699
e-value: 5.0E-5
score: 21.2
coord: 491..525
e-value: 2.2E-6
score: 25.5
coord: 421..455
e-value: 2.1E-6
score: 25.5
coord: 246..279
e-value: 1.2E-8
score: 32.6
coord: 386..420
e-value: 5.7E-7
score: 27.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 317..345
e-value: 2.4E-5
score: 24.3
coord: 491..520
e-value: 7.9E-4
score: 19.5
coord: 666..695
e-value: 0.0034
score: 17.5 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 172..219
e-value: 4.7E-9
score: 36.3
coord: 243..292
e-value: 1.8E-13
score: 50.4
coord: 349..397
e-value: 1.1E-11
score: 44.7
coord: 418..467
e-value: 1.2E-8
score: 35.0
coord: 593..642
e-value: 5.3E-9
score: 36.1
coord: 698..745
e-value: 1.5E-10
score: 41.1
coord: 523..572
e-value: 1.3E-15
score: 57.3 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 279..313
score: 12.704 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 489..523
score: 11.498 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 559..593
score: 12.266 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 172..206
score: 10.994 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 664..698
score: 10.742 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 454..488
score: 11.323 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 699..733
score: 11.992 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 207..237
score: 10.249 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 629..663
score: 12.079 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 384..418
score: 12.057 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 594..628
score: 10.907 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 314..348
score: 10.654 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 524..558
score: 13.055 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 349..383
score: 13.428 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 419..453
score: 11.016 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 244..278
score: 13.482 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 310..434
coord: 137..342
coord: 581..748
coord: 416..582 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_C_REGION | Signal peptide C-region | coord: 28..38 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE | Signal Peptide | coord: 1..38 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_H_REGION | Signal peptide H-region | coord: 16..27 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 39..750 |
| None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_N_REGION | Signal peptide N-region | coord: 1..15 |
| None | No IPR available | SIGNALP_EUK | SignalP-noTM | SignalP-noTM | coord: 1..28
score: 0.592 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_E-siliculosus-1a_M_contig72.15365.1 ID=prot_E-siliculosus-1a_M_contig72.15365.1|Name=mRNA_E-siliculosus-1a_M_contig72.15365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=751bp
MGLPARGRMPAWLEHIAIAVTLACCTCAGDGFTGLSSAVDKSSCAFGLQG
AMPTHSACSNSELMAKNCRTHRHSRRDGGSTRQLSGTRVPCELDAGAVDA
GVSGEATRLGVLSRRGEGPLESSTRSRGAASRRGKSKSLVKLKSILLEAK
GGDLRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMP
TEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNS
AIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAM
DLLEEVIEQGFPPTTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADV
ISYSSVIAACGRGGRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDR
WKEALHLLTEMKTVGLVPTVISYNTATAACAVNGRWVEALDLLKEMPAQG
IAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDAC
GRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFRE
MPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNS
AIEACGTGEQWELALQLLKGMPTRGLKPDIISYNSAVTACAKSGRWREAL
GLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNL
ITYSAAIGACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLIVISAFQRCSD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
|