prot_E-siliculosus-1a_M_contig72.15349.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15349.1
Unique Nameprot_E-siliculosus-1a_M_contig72.15349.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length161
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15349.1 vs. uniprot
Match: D8LRI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.830e-36
Identity = 86/172 (50.00%), Postives = 99/172 (57.56%), Query Frame = 0 
Query:    1 MVLIVSGVVWTGIMVTKFAISKVLVWKALERCMRPDENRELETGG-DEEARDGGQDVPELGQAVHNNEEEEQQPLVGVTNRILGIQTRSLSRVLNTGGIMTRTRRMMYRLWCARRWRQGEGREPT-----LQSQSFTGYNSLDPWDSG-GEGGE---------VTDYLVALY 156
            MV+IVSG VW GIMVTK  ISKVLVWKALERC+RPDENRE +T   DEEARD G+DVPEL Q V + EEE+QQP++G T R LG                                +QG+GREPT     LQ +S TG NSLD    G GEGG+         VTD+L   Y
Sbjct:    1 MVIIVSGAVWAGIMVTKCVISKVLVWKALERCVRPDENREHKTNSSDEEARDDGEDVPELAQEVDDEEEEDQQPVIGATKRTLGTL------------------------------KQGDGREPTSRVDRLQPESSTGDNSLDSRSDGSGEGGDYVPDSTMMMVTDFLFHFY 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15349.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI0_ECTSI4.830e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..160
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:73387..74677 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15349.1mRNA_E-siliculosus-1a_M_contig72.15349.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig72 73365..74677 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig72.15349.1 ID=prot_E-siliculosus-1a_M_contig72.15349.1|Name=mRNA_E-siliculosus-1a_M_contig72.15349.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=161bp
MVLIVSGVVWTGIMVTKFAISKVLVWKALERCMRPDENRELETGGDEEAR
DGGQDVPELGQAVHNNEEEEQQPLVGVTNRILGIQTRSLSRVLNTGGIMT
RTRRMMYRLWCARRWRQGEGREPTLQSQSFTGYNSLDPWDSGGEGGEVTD
YLVALYAYYV*
back to top