prot_E-siliculosus-1a_M_contig71.15321.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig71.15321.1
Unique Nameprot_E-siliculosus-1a_M_contig71.15321.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length865
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig71.15321.1 vs. uniprot
Match: D8LDQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ5_ECTSI)

HSP 1 Score: 948 bits (2451), Expect = 0.000e+0
Identity = 580/647 (89.64%), Postives = 597/647 (92.27%), Query Frame = 0
Query:  179 MGGAPSSINGS-GERRGRGXXXXXXXSSRRSEDENSLEEIQASIEELLGMQGLGSGSWDNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTADIEPDEYCYKAAIIACSAANQWGRALNLFRRFQRATDGTGGASPPTAAGAAGDNAKGVAPGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMRGNNAQEDNDDELAEILLLLDEERPDTXXXXXXXXXEQRQEPLASNHSPTTATAKGGSPDGVEFRVAAQSSSLLFSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLGRLQAQPPTXXXXXXXXXXXTEAGIRQDQEISSRPGFSGGQERLPPSRAPQQARSPWRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREACPPGGSLRPGVSRYNSVLRTLRNAPARDRRTSFGAPTTPPLGGEITPAGGDGSRVDGDFVDLEAAGGRWSGAEGWAEGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKATA 824
            MGGA S ++GS G RRGR        SSR  EDENSLEEIQASIEELLGMQGLGSGSW+NEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILL+WST DIEPDEYCYKAAIIACSAANQWGRAL+LFRRFQRATDG GGASPP AAGAAGDNAKG APGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RGN+AQED+D +LAEI           XXXXXXXXX   QEPLASNHSPTTATAKGGSPDGVEFRVAA SS  LFSPP+PDVRSYNSCIAACRRGGQSGLA+LFFHDMLSRGLRPDVWTFK AVLGRLQAQPPT XXXXXXXXXXT+AG RQD EISSRPGFSGGQERLPPSRAPQQARSPWRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESR+LLEDLREA PPGGSL PGVSRYNSVLRTLRNAPARDRRT+ GAPT PPLGGE+TPAGG GSR+D +FVDLEAAGGRWSGAEGWA+GHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKA A
Sbjct:    1 MGGASSPVDGSSGRRRGRAGGG----SSRGGEDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLEWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGIGGASPPAAAGAAGDNAKGFAPGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGNDAQEDDDHDLAEIXXXXXXXXXXXXXXXXXXXXXXXQEPLASNHSPTTATAKGGSPDGVEFRVAALSS--LFSPPSPDVRSYNSCIAACRRGGQSGLARLFFHDMLSRGLRPDVWTFKCAVLGRLQAQPPTPXXXXXXXXXXTKAGTRQDPEISSRPGFSGGQERLPPSRAPQQARSPWRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRSLLEDLREASPPGGSLLPGVSRYNSVLRTLRNAPARDRRTTLGAPTAPPLGGEVTPAGGGGSRIDEEFVDLEAAGGRWSGAEGWADGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAAA 641          
BLAST of mRNA_E-siliculosus-1a_M_contig71.15321.1 vs. uniprot
Match: A0A6H5KYV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV0_9PHAE)

HSP 1 Score: 947 bits (2448), Expect = 0.000e+0
Identity = 570/616 (92.53%), Postives = 586/616 (95.13%), Query Frame = 0
Query:  209 EDENSLEEIQASIEELLGMQGLGSGSWDNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTADIEPDEYCYKAAIIACSAANQWGRALNLFRRFQRATDGTGGASPPTAAGAAGDNAKGVAPGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMRGNNAQEDNDDELAEILLLLDEERPDTXXXXXXXXXEQRQEPLASNHSPTTATAKGGSPDGVEFRVAAQSSSLLFSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLGRLQAQPPTXXXXXXXXXXXTEAGIRQDQEISSRPGFSGGQERLPPSRAPQQARSPWRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREACPPGGSLRPGVSRYNSVLRTLRNAPARDRRTSFGAPTTPPLGGEITPAGGDGSRVDGDFVDLEAAGGRWSGAEGWAEGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKATA 824
            EDENSLEEIQASIEELLGMQGLGSGSW+NEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARAR+QGTELNSIIYGCAMNAVGRSGRYKECMILLDWST DIEPDEYCYKAAIIACSAANQWGRAL+LFRRFQRATDG GGASPP AAGAAGD AKGV PGTAIYNAVITACARGLFTEEALAFFLEMG+RG+RRDE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AMRGNNAQ+D+ D L +ILLLL EE PDT XXXXXXX E+RQEPLASNHSPTTATAKGGSPD VEFRVA  SSSL  SPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVL RLQAQPPTXXXXXXXXXX T+AG R+DQE+SSRP FSGGQERLPPSRAPQQARSPWRALLVLLE+VDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREA PPGGSLRPGVSRYNSVLRTLRNAPAR  RT+FGAPTTPPLGGE+TPAGGDG RVDGDFVDLEAAGGRWSGAEGW +GHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKA A
Sbjct:  150 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGVGGASPPAAAGAAGDKAKGVTPGTAIYNAVITACARGLFTEEALAFFLEMGDRGIRRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRGNNAQDDDHD-LVQILLLLGEELPDTPXXXXXXXAEERQEPLASNHSPTTATAKGGSPDDVEFRVAVPSSSLS-SPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXX-TKAGTRRDQEVSSRPDFSGGQERLPPSRAPQQARSPWRALLVLLEEVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREASPPGGSLRPGVSRYNSVLRTLRNAPARKCRTTFGAPTTPPLGGEVTPAGGDGIRVDGDFVDLEAAGGRWSGAEGWVQGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAAA 762          
BLAST of mRNA_E-siliculosus-1a_M_contig71.15321.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-10
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 0
Query:  242 GVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTAD---IEPDEYCYKAAIIACSAANQWGRALNLFRRFQRA 349
            G  +   RE+  LV  +K +GRR  W   ++V  RAR +G  +++ +Y C ++ V +SGR+ E + LL  +  D   ++P++YCY AA+ AC+    W  AL L    + A
Sbjct:   66 GCESEAARERIELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAKEDPAGLDPNKYCYTAAVSACARGRNWELALALLDEMREA 176          
BLAST of mRNA_E-siliculosus-1a_M_contig71.15321.1 vs. uniprot
Match: A0A835YLF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.500e-10
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  243 VPAAVEREQRTLVREIKALGRRGRWGDVLEVV--ARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLD-WSTADIEPDEYCYKAAIIACSAANQWGRALNL 342
            + +AV   Q+TL+RE+ ALGR+GRW + L  +  AR       +N+ I+G A++A+ RS ++++ + +L+    A + PD  C  AAI AC++A  W  A +L
Sbjct:  155 IDSAVLERQKTLLRELNALGRQGRWSEALARLDAARGAEDPIPMNAYIFGAAISALARSRKWQQALGVLETMREAGVRPDTVCLNAAIAACASAGAWSEARHL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig71.15321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDQ5_ECTSI0.000e+089.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYV0_9PHAE0.000e+092.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D4_9PHAE1.260e-1034.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLF2_9STRA3.500e-1036.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 368..496
e-value: 8.1E-30
score: 106.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 246..360
e-value: 2.1E-13
score: 52.0
coord: 541..603
e-value: 1.2E-7
score: 33.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 374..423
e-value: 6.1E-9
score: 35.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 448..475
e-value: 7.6E-5
score: 22.7
coord: 556..585
e-value: 0.018
score: 15.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 556..589
e-value: 1.5E-5
score: 22.9
coord: 412..445
e-value: 5.4E-6
score: 24.2
coord: 378..410
e-value: 4.1E-4
score: 18.3
coord: 448..475
e-value: 1.8E-5
score: 22.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 553..587
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 10.052
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 9.153
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 672..702
score: 7.388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 6.215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..315
score: 5.459
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 11.608
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 319..349
score: 6.84
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 370..596
coord: 258..347

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig71contigE-siliculosus-1a_M_contig71:735532..741744 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig71.15321.1mRNA_E-siliculosus-1a_M_contig71.15321.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig71 735532..741744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig71.15321.1 ID=prot_E-siliculosus-1a_M_contig71.15321.1|Name=mRNA_E-siliculosus-1a_M_contig71.15321.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=865bp
GATCERDSSAALRSTHAAQNNVDMNLPTSCCNVNAMAFVVQPSFPAVLPA
SRQPTVRRRRRPSWTTTTTTSPPEGGDAPHGPAASFSSLALLASKQPPPP
PPQQAPQGGRTTNGDEESPSTTTPRRRYPSRLQPSRENADNNNSGPPPPP
PPQPRPPPNTKGKKRPRIPVPPLQRAFGMGGAPSSINGSGERRGRGAGGA
GGGSSRRSEDENSLEEIQASIEELLGMQGLGSGSWDNEPGGGVPAAVERE
QRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSG
RYKECMILLDWSTADIEPDEYCYKAAIIACSAANQWGRALNLFRRFQRAT
DGTGGASPPTAAGAAGDNAKGVAPGTAIYNAVITACARGLFTEEALAFFL
EMGERGVRRDEVTYTAAIDACARGGLSRKGLDLLSEMRTAGLRPSLASYN
AALDGCGREGRWEEAADLIDAMRGNNAQEDNDDELAEILLLLDEERPDTP
PSSPPASPEQRQEPLASNHSPTTATAKGGSPDGVEFRVAAQSSSLLFSPP
APDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLGRL
QAQPPTPPPAPAAAAAATEAGIRQDQEISSRPGFSGGQERLPPSRAPQQA
RSPWRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLR
EACPPGGSLRPGVSRYNSVLRTLRNAPARDRRTSFGAPTTPPLGGEITPA
GGDGSRVDGDFVDLEAAGGRWSGAEGWAEGHVSGFLEDMRAAGVTPDRDT
YQCAIRCATDAALLDIAKAEKATAAAEEEEEAVGKGGTVARGSDEGASNR
GGGGGVVVDVDPVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf