prot_E-siliculosus-1a_M_contig7.15198.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15198.1
Unique Nameprot_E-siliculosus-1a_M_contig7.15198.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length600
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15198.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 788 bits (2034), Expect = 5.740e-274
Identity = 496/535 (92.71%), Postives = 501/535 (93.64%), Query Frame = 0 
Query:   65 QDILVDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDVMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLQGDGDGLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAEEEAPASSSLRVLSLSRCPGVADQGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSAXXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTSIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 599
            QDILVDNICQRIRG GQHQAVSYGGLD ATGTRILQRLA+LRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHND MTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGL+RGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALL GDGDGL A    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     G EEEAPASSSLRVLSLSRCPGVADQGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPS+                  GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGL LLGSA+IDLSLAHT+IDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL
Sbjct:  555 QDILVDNICQRIRGSGQHQAVSYGGLDGATGTRILQRLANLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLARGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLEAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GTEEEAPASSSLRVLSLSRCPGVADQGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSSTAAASGEAGVCGAVV---GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLGLLGSAVIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 1081
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15198.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 711 bits (1834), Expect = 7.200e-253
Identity = 446/531 (83.99%), Postives = 451/531 (84.93%), Query Frame = 0 
Query:   69 VDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDVMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLQGDGDGLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAEEEAPASSSLRVLSLSRCPGVADQGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSAXXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTSIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 599
            +DNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHND MTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETL+LRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALL GDGDGLG                                                                    GLARLGASRPLRASLRELDVSGTS TESGL+RLLDPSAXXXXXXXXXXXXXXXXXX       LRLESLVLQHGGGGIT VGLSALVGLTSLTR+DLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHT+IDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVE LRARTAALNIRL
Sbjct:    1 MDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG--------------------------------------------------------------------GLARLGASRPLRASLRELDVSGTSATESGLVRLLDPSAXXXXXXXXXXXXXXXXXXXXXXXXXLRLESLVLQHGGGGITSVGLSALVGLTSLTRMDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 463
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE5.740e-27492.71UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSQ0_ECTSI7.200e-25383.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 434..461
e-value: 5.2
score: 16.0
coord: 534..558
e-value: 440.0
score: 1.7
coord: 192..217
e-value: 4.6
score: 16.2
coord: 218..243
e-value: 0.055
score: 22.6
coord: 328..353
e-value: 3.6
score: 16.6
coord: 246..271
e-value: 250.0
score: 3.7
coord: 143..168
e-value: 560.0
score: 0.9
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 219..241
e-value: 0.038
score: 14.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 97..272
e-value: 1.4E-23
score: 85.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 513..577
e-value: 3.8E-7
score: 31.6
coord: 324..381
e-value: 5.7E-7
score: 31.0
coord: 403..512
e-value: 1.7E-10
score: 42.5
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 329..498
coord: 118..380
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 329..498
coord: 118..380
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 136..558

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:2162552..2168845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15198.1mRNA_E-siliculosus-1a_M_contig7.15198.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig7 2157453..2169893 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig7.15198.1 ID=prot_E-siliculosus-1a_M_contig7.15198.1|Name=mRNA_E-siliculosus-1a_M_contig7.15198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=600bp
MVQFSDGATIKKGEGAMPSADNDQAGGGGGPDGGGGDDGGGGHRGGGGAG
GPAARKSRVEVGTLQDILVDNICQRIRGGGQHQAVSYGGLDAATGTRILQ
RLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLS
LAHNDVMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVL
RGCTKVADLGILGLSRGAPSLTCLDLAGCTGVTDAGVAHLSSMVVGGKLE
CLRLDGLVGLSDDGLDALLQGDGDGLGAAAAAAAAAPAASAARAAAARAA
AARASSSSPSDGGGASPAGGAEEEAPASSSLRVLSLSRCPGVADQGLARL
GASRPLRASLRELDVSGTSTTESGLLRLLDPSAAAAAAAASGEAGGGGAV
VGRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGV
TSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSV
ARAAGLALLGSAMIDLSLAHTSIDDDTMDAVASLPRLTTLTLRGTAVTGA
GVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp