prot_E-siliculosus-1a_M_contig7.15167.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15167.1
Unique Nameprot_E-siliculosus-1a_M_contig7.15167.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length116
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15167.1 vs. uniprot
Match: D7FN78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN78_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.060e-22
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0 
Query:   58 RAASPVLSFEELARILAEEWDSMPEEAKTPYRQRAEEEHLRHETMSAALVLTQVTSVS 115
            RAASPV+SFEELARILAEEWDSMPEEAKTPYRQRA+EEHLRHETMSAAL LTQ+ + S
Sbjct:   25 RAASPVVSFEELARILAEEWDSMPEEAKTPYRQRADEEHLRHETMSAALALTQIGTPS 82
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15167.1 vs. uniprot
Match: A0A443SGA6_9ACAR (TOX high mobility group box family member 4-like isoform X7 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SGA6_9ACAR)

HSP 1 Score: 50.8 bits (120), Expect = 5.440e-5
Identity = 27/71 (38.03%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:   39 KDQAPLSPFA-LFSEEKTQLRAASPVLSFEELARILAEEWDSMPEEAKTPYRQRAEEEHLRHETMSAALVL 108
            K   P+S +A  F E++T++++ +P  SF E+++I+A EWDS+P E K  Y+++A++E  +HE + A   L
Sbjct:   81 KPPKPVSAYAHFFREKQTEIKSKNPDASFGEVSKIVASEWDSLPNETKVIYKKKADQE--KHEYLRALATL 149
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN78_ECTSI3.060e-2287.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A443SGA6_9ACAR5.440e-538.03TOX high mobility group box family member 4-like i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 39..108
e-value: 1.1E-6
score: 38.2
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 43..102
e-value: 7.0E-12
score: 45.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 40..107
score: 12.063
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 28..113
e-value: 5.4E-14
score: 54.2
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 41..102
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 43..101
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 43..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1871048..1873240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15167.1mRNA_E-siliculosus-1a_M_contig7.15167.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig7 1871048..1873240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig7.15167.1 ID=prot_E-siliculosus-1a_M_contig7.15167.1|Name=mRNA_E-siliculosus-1a_M_contig7.15167.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=116bp
MDTNAENTGGDSSSGWTQALSPRATHHPTTPLRDAVGEKDQAPLSPFALF
SEEKTQLRAASPVLSFEELARILAEEWDSMPEEAKTPYRQRAEEEHLRHE
TMSAALVLTQVTSVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom