prot_E-siliculosus-1a_M_contig7.15039.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15039.1
Unique Nameprot_E-siliculosus-1a_M_contig7.15039.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length480
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig7.15039.1 vs. uniprot
Match: D7G8X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X3_ECTSI)

HSP 1 Score: 444 bits (1141), Expect = 1.140e-144
Identity = 371/502 (73.90%), Postives = 381/502 (75.90%), Query Frame = 0
Query:    3 FCGRGRQPRTSTTSSATTAASSREG-----YSHFLQLWEDVCETHHGVRDFAFPSKGAVSSAMGAFSEVLGEKRPEEQRRQKFCELLDVLMKLEPRPPALGHFLAPWPTESTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----RGVAAGGLPATPDRPPHNDRSRGSTTTIRQAGVAATTAEEQSAVPLPRDLRLWAFLALVGVLEACAALRALGVTALSLPVTLVLXXXXXXXXXXXXXXXXXXXXXXXXXXRQQERRPPRVDADSGGVRRRVNAMSFGWRPWRPHLLSSVAAXXXXXXXXXXXXXXXXXXXGNLFXXXXXXXXXXXAXAVGLGGVG----------------GXXXXXXXXAAATXXXXXXXXXXTRRRSGGVASSSSPTRGRVPRGARRRSPARPPIGRRGGECVNDLGLGLGASSSPATAVGGVRAVAAGVPGGIAQELQME 479
            FCGR RQPR STTSSATTAASSR G     YSHFLQLWEDVCETH GVRDFAFP KGAVSSA GAFSEVLGEKRPEEQRR+ FCELL VLMKLEPRPPAL HFLAPWPTESTAS                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     RGVAAGGLP T DRPPHNDRSRGSTTTIRQ GVAA TAE QSAVPLPR+ RLWAFL L+GVLEACAALRALGVTALSLPVTLVLXXXXXXXXXXXXXXXXXXXXXXXXXXRQ++RRPP+VDADSG  RRR  A+ FG RPW P+LL  VAA XXXXXXXXXXXXXXXXXX             XXA AVGLGG                  G            XXXXXXXXXXTRRRSGG ASS SPTRGRVPR ARRRSPARPP+GRRG ECVNDLG+GL ASSSPATAVGGVRAVAAGVPGGIAQELQME
Sbjct:  353 FCGRRRQPRISTTSSATTAASSRGGSDLPPYSHFLQLWEDVCETHDGVRDFAFPPKGAVSSARGAFSEVLGEKRPEEQRRETFCELLGVLMKLEPRPPALRHFLAPWPTESTASSSTAATRLVGGRRNREGQHQQEQARGEDEASWAGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQRLRGVAAGGLPVTLDRPPHNDRSRGSTTTIRQVGVAAATAEGQSAVPLPRNFRLWAFLTLLGVLEACAALRALGVTALSLPVTLVLXXXXXXXXXXXXXXXXXXXXXXXXXXRQRDRRPPQVDADSGDDRRRATAVPFGRRPWEPNLLGGVAAAXXXXXXXXXXXXXXXXXX-------------XXAAAVGLGGXXXXXXXXXXXXXXXXXXGGSGARAGAPXXXXXXXXXXXXXTRRRSGGAASSGSPTRGRVPRRARRRSPARPPMGRRGRECVNDLGIGLSASSSPATAVGGVRAVAAGVPGGIAQELQME 841          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15039.1 vs. uniprot
Match: A0A6H5JLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB3_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 1.120e-113
Identity = 334/513 (65.11%), Postives = 347/513 (67.64%), Query Frame = 0
Query:   28 YSHFLQLWEDVCETHHGVRDFAFPSKGAVSSAMGAFSEVLGEKRPEEQRRQKFCELLDVLMKLEPRPPALGHFLAPWPTESTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------RGVAAGGLPATPDRPPHNDRSRGSTTTIRQAGVAATTAEEQSAVPLPRDLRLWAFLALVGVLEACAALRALGVTALSLPVTLVLXXXXXXXXXXXXXXXXXXXXXXXXXXRQQER---RPPRVDADSGGVRRRVNAMSFGWRPWRPHLLSSVAAXXXXXXXXXXXXXXXXXXXGNLFXXXXXXXXXXXAXAVGLGGVGGXXXXXXXXAAATXXXXXXXXXX----------------------------------------------TRRRSGGVASSSSPTRGRVPRGARRRSPARPPIGRRGGECVNDLGLGLGASSSPATAVGGVRAVAAGVPGGIAQELQME 479
            YSHFLQLWED+CETHHGVRDF FP KGAVSSA GAFSEVLGEKRPE+QRR+KFCELL+VLMKLEPRPPAL HFLAPWPTESTAS           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         RGVAA GLP TPDRPPHNDR+RGST T RQAGV A TAEE SAVPLPRDLRLW FL LVGVLEACAA+RALGVTALSLPVTLVL                          +Q+ R   RPP++DADSGGVR R  A+SFG RPW+PHLL  VAAXXXXXXXXXXXXXXXXXXX    XX      XXX X         XXXXXXXX    XXXXXXXXXX                                              T RRSG V SSSSPTRGR PRG RR+SPARPPIG RG   VN LGLGLGASS PATAVGGVRAVAAGVPGGIAQELQME
Sbjct:  604 YSHFLQLWEDICETHHGVRDFTFPPKGAVSSARGAFSEVLGEKRPEDQRREKFCELLEVLMKLEPRPPALRHFLAPWPTESTASSSTAATGLVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGGIWLTGGGSDARRRDQREQLRLRGVAAEGLPVTPDRPPHNDRTRGSTATTRQAGVEAATAEEHSAVPLPRDLRLWVFLTLVGVLEACAAVRALGVTALSLPVTLVLTAIAPAVAAVAFSVSSRSRSCPSRQGQQERRKLSRPPQLDADSGGVRGRATALSFGRRPWQPHLLGGVAAXXXXXXXXXXXXXXXXXXXXXXXXXGAAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGTPRRSGVVTSSSSPTRGRAPRGVRRKSPARPPIGHRGAGGVNALGLGLGASSFPATAVGGVRAVAAGVPGGIAQELQME 1116          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8X3_ECTSI1.140e-14473.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLB3_9PHAE1.120e-11365.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 234..253
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 353..479
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 282..326
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 260..281
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 254..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 327..352
NoneNo IPR availableTMHMMTMhelixcoord: 234..253
NoneNo IPR availableTMHMMTMhelixcoord: 331..353
NoneNo IPR availableTMHMMTMhelixcoord: 373..395
NoneNo IPR availableTMHMMTMhelixcoord: 258..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:419777..422918 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15039.1mRNA_E-siliculosus-1a_M_contig7.15039.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig7 419777..422918 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig7.15039.1 ID=prot_E-siliculosus-1a_M_contig7.15039.1|Name=mRNA_E-siliculosus-1a_M_contig7.15039.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=480bp
RIFCGRGRQPRTSTTSSATTAASSREGYSHFLQLWEDVCETHHGVRDFAF
PSKGAVSSAMGAFSEVLGEKRPEEQRRQKFCELLDVLMKLEPRPPALGHF
LAPWPTESTASSSAAAGLVGGRRNRGGQQEQAQARRGEDAGTRTTRNGGG
GGGSESASFGGIWLNGGGSDARRKDQREQLLLRGVAAGGLPATPDRPPHN
DRSRGSTTTIRQAGVAATTAEEQSAVPLPRDLRLWAFLALVGVLEACAAL
RALGVTALSLPVTLVLTAIAPAVAAVVFSVSSHPRSWPSPWPRQQERRPP
RVDADSGGVRRRVNAMSFGWRPWRPHLLSSVAAAVAAAAAAAAAAAAAAV
GLGNLFGGGGGGGAGGGAAAVGLGGVGGGSGGAGSGAAATAAVGLGGRGG
TRRRSGGVASSSSPTRGRVPRGARRRSPARPPIGRRGGECVNDLGLGLGA
SSSPATAVGGVRAVAAGVPGGIAQELQME*
back to top