prot_E-siliculosus-1a_M_contig7.15016.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15016.1
Unique Nameprot_E-siliculosus-1a_M_contig7.15016.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length176
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15016.1 vs. uniprot
Match: D7FL92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL92_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 3.560e-115
Identity = 166/178 (93.26%), Postives = 172/178 (96.63%), Query Frame = 0 
Query:    1 MGDADRKIPAVKLFVSQLNNARQPVEAAGLTGLEESNLVGLVLVGIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGVGLDGGSNDAGHGV--GDADGLPKKGQHVLMVGAVEAPCDDNGQGRRV-KRRSSCRRYRVLCDVVKDVGPESPNRDALWGLEVIDFWMSRPRNPQG 175
            MGDADRKIPAVKLFVSQLN+ARQPVEAA +TGLEESNLVGLVL+GIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPG+GLDGG+NDAGHGV  G ADGLPKKGQHVLMVGAVEAPCDDNGQGRRV +RRSSCRRYRVLCDVVKDVGPESPNRD LWGLEVIDFWMSRPRNPQG
Sbjct:    1 MGDADRKIPAVKLFVSQLNSARQPVEAADVTGLEESNLVGLVLMGIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGIGLDGGTNDAGHGVRDGGADGLPKKGQHVLMVGAVEAPCDDNGQGRRVQRRRSSCRRYRVLCDVVKDVGPESPNRDTLWGLEVIDFWMSRPRNPQG 178
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL92_ECTSI3.560e-11593.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 6..129
e-value: 5.5E-6
score: 28.0
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 9..164
e-value: 2.5E-13
score: 50.0
IPR032245RecQ-mediated genome instability protein 2PANTHERPTHR33962FAMILY NOT NAMEDcoord: 5..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:115500..117750 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15016.1mRNA_E-siliculosus-1a_M_contig7.15016.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig7 115371..118885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig7.15016.1 ID=prot_E-siliculosus-1a_M_contig7.15016.1|Name=mRNA_E-siliculosus-1a_M_contig7.15016.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=176bp
MGDADRKIPAVKLFVSQLNNARQPVEAAGLTGLEESNLVGLVLVGIEFTR
VWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGVGLDGGSNDAGHGVGDAD
GLPKKGQHVLMVGAVEAPCDDNGQGRRVKRRSSCRRYRVLCDVVKDVGPE
SPNRDALWGLEVIDFWMSRPRNPQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032245RMI2