mRNA_E-siliculosus-1a_M_contig991.17798.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE) HSP 1 Score: 200 bits (509), Expect = 2.320e-57 Identity = 144/185 (77.84%), Postives = 147/185 (79.46%), Query Frame = 1 Query: 1 AQGGTARPLVKQRIATLQDVLDESDGGSSAAPLRVEEEDSADGALQGRGSKGKQPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQNKKTKWKWDRWVVPCSIQHLQQALGSSRGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 555
A GGTARPLVKQRIATLQDVLDE DGGSSAAPLR E D AD +LQGR KGK+PARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXX VQQNK GKEFSCGKGYQYEQWYSRVA +VKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD
Sbjct: 212 AHGGTARPLVKQRIATLQDVLDEPDGGSSAAPLRAEVGDFADASLQGRSGKGKRPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVQQNK--------------------------GKEFSCGKGYQYEQWYSRVAQYVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 370
BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: D7G1M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M7_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.940e-29 Identity = 76/146 (52.05%), Postives = 83/146 (56.85%), Query Frame = 1 Query: 115 DSADGALQGRGSKGKQPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQNKKTKWKWDRWVVPCSIQHLQQALGSSRGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLR 552
DSAD ALQG KGKQPARAPRME+ETAGQD ++ RW S + A + F CGKGY YEQWYSRVAHHVKIELAKNK YM+THGSLLEERFGRAEM+HLR
Sbjct: 44 DSADAALQG--GKGKQPARAPRMENETAGQDTLKRNRVE-----------------------SSRTRSPGNMTRWSRRSSYRLSSSAWATG----FICGKGYGYEQWYSRVAHHVKIELAKNKGYMKTHGSLLEERFGRAEMQHLR 160
BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: D7FH42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH42_ECTSI) HSP 1 Score: 107 bits (268), Expect = 4.070e-24 Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 1 Query: 322 WKWDRWVVPCSIQHLQQALGSS-RGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 555
WK++ +Q + + LG GKEFSCGKGY +EQWYSRVAH+VKIELAKNK YMQTHGSLLEERF RAEM+HLRD
Sbjct: 66 WKYETVEKEVILQVVLERLGDRIYGKEFSCGKGYGHEQWYSRVAHYVKIELAKNKVYMQTHGSLLEERFARAEMQHLRD 144
BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: A0A6H5K6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J2_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.050e-18 Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 376 LGSSRGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 555
+ +GK+FSCGKGY +EQ YSRV HHVKI+LAKN MQTHGSLL ERFGRA MKHLRD
Sbjct: 1 MEDGQGKKFSCGKGYGHEQRYSRVVHHVKIQLAKNNTSMQTHGSLLNERFGRAGMKHLRD 60 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig991.17798.1 >prot_E-siliculosus-1a_M_contig991.17798.1 ID=prot_E-siliculosus-1a_M_contig991.17798.1|Name=mRNA_E-siliculosus-1a_M_contig991.17798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=185bp AQGGTARPLVKQRIATLQDVLDESDGGSSAAPLRVEEEDSADGALQGRGSback to top mRNA from alignment at E-siliculosus-1a_M_contig991:759..2653+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig991.17798.1 ID=mRNA_E-siliculosus-1a_M_contig991.17798.1|Name=mRNA_E-siliculosus-1a_M_contig991.17798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1895bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:759..2653+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig991:759..2653+ >mRNA_E-siliculosus-1a_M_contig991.17798.1 ID=mRNA_E-siliculosus-1a_M_contig991.17798.1|Name=mRNA_E-siliculosus-1a_M_contig991.17798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:759..2653+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |