mRNA_E-siliculosus-1a_M_contig99.17792.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: D7FX00_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX00_ECTSI) HSP 1 Score: 615 bits (1585), Expect = 6.980e-202 Identity = 365/415 (87.95%), Postives = 370/415 (89.16%), Query Frame = 1 Query: 1549 VPRGTAAERGRGSRPLSDADPFGSNSGRHGAPPSQSAQQQGQGGRASRGSTGGLSRRNSFGAXXRRGTARGALAGXXXXXXXXXXD---FEGDSGMMRTASGGSLRGVGGYASRNQXXXXXXXXXXPYDXXXXXXXXXXXXXXXXXXXXXXXX-AGYDSDTMSVMDQDAIRASMKKRGARGTAGTGGRRGDTVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTAT 2781
VPRGTAAERGRGSRPLS+ADPFGSNSGRHGAPPSQSAQQQGQGGRASRGST XX XXXXXXXXXX FEGDSGMMRTASGGSLRGVGGYASRNQ PYD XXXXXXXXXXXXXXXXX AGYDSDTMSVMDQDAIRASM+KRGARGTAG GGRRGDTV+YIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPA+IRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFT+T
Sbjct: 54 VPRGTAAERGRGSRPLSEADPFGSNSGRHGAPPSQSAQQQGQGGRASRGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEGDSGMMRTASGGSLRGVGGYASRNQRQQQQRRGRDPYDNTYDAEEXXXXXXXXXXXXXXXXXXAGYDSDTMSVMDQDAIRASMRKRGARGTAGAGGRRGDTVDYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAKIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTST 468
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A6H5JZ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ01_9PHAE) HSP 1 Score: 347 bits (889), Expect = 1.440e-104 Identity = 231/308 (75.00%), Postives = 235/308 (76.30%), Query Frame = 1 Query: 289 ADLPGARTSNNNSGFPAPATQNPFETQALNTGAFHTAGGAAAGXXXASRGVAGGLNEASAGTNSGAGVVEDLFGVAGGEGPGAMVPYGQQQPLESHPLHQHHHRHPAAXXXXHPTYQGAIVPFQXXXXXXXXXXXXGTPVTASNPFDDLLGGVSTAVGTGSGAGILQQQHTQQPHQQQWPGHPFAGSQQQYPXXXXXXXQQQSWLGQGGAARNGDATADGGLQLMQPQYPPHQQQLQIAPVQQPFQQQXXXXLQTVAPGNPFFHAAQDVPQQQQK------------APGADLFGDDPFGSVNSGSKV 1176
ADLPGARTSNNNSGFP PATQNPFE QA XXX VAGGL EA A TNSGAGVVEDLFGV GG GPGAMVPYGQQQPLESHPLH H XXXX XXXXXXXXXXXX T VTASNPFDDLLGGVSTAVGTGSGAGILQQQ+TQQPHQQQWPGHPFAGS QQYP XXXXXX SWLGQGGAARNGDA ADGGLQ MQ QYPPHQQQLQIAPVQQPFQQQ LQTVAPGNPFF AAQD+PQQQQK APGA+LFGDDPFGSVNSGSK+
Sbjct: 10 ADLPGARTSNNNSGFPTPATQNPFENQAXXXXXXXXXXXXXXXXXXXXXXVAGGLIEAPASTNSGAGVVEDLFGVGGGAGPGAMVPYGQQQPLESHPLHLHXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXTSVTASNPFDDLLGGVSTAVGTGSGAGILQQQYTQQPHQQQWPGHPFAGSLQQYPQXXXXXXXXXSWLGQGGAARNGDAAADGGLQPMQSQYPPHQQQLQIAPVQQPFQQQQQ--LQTVAPGNPFFDAAQDLPQQQQKGCSAASERRIRQAPGANLFGDDPFGSVNSGSKM 313
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A6H5JQ14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ14_9PHAE) HSP 1 Score: 278 bits (710), Expect = 2.170e-82 Identity = 145/168 (86.31%), Postives = 148/168 (88.10%), Query Frame = 1 Query: 2314 TYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIK------------VKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTAT 2781
T L +NAARPLRVEFERGQL+QEDNVGQILFKKTVGVPRS+SAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIK VKSFKGHPTPLYFFTVK PKSRLKQLNFASQNLGDLQHLRTSISKFTAT
Sbjct: 7 TDTSRLSWHQNAARPLRVEFERGQLDQEDNVGQILFKKTVGVPRSFSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKASICCYRRERSVVKSFKGHPTPLYFFTVKPPKSRLKQLNFASQNLGDLQHLRTSISKFTAT 174
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A6H5JUS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS7_9PHAE) HSP 1 Score: 220 bits (560), Expect = 3.320e-62 Identity = 142/173 (82.08%), Postives = 146/173 (84.39%), Query Frame = 1 Query: 1825 MMRTASGGSLRGVGGYASRNQXXXXXXXXXXPYDXXXXXXXXXXXXXXXXXXXXXXXXAGYDSDTMSVMDQDAIRASMKKRGARGTAGTGGRRGDTVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIK 2343
MMRTASGGSLRGVGG ASRNQ P D XXXXXXXXXXXXXXXXX G+DSDTMSVMDQDAIRASM+KRGAR TAG GGRRGDTVE +RARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNG+TVEGLTYQQTLECIK
Sbjct: 1 MMRTASGGSLRGVGGNASRNQRQQQHRGRD-PCDDTYDDEXXXXXXXXXXXXXXXXX-TGFDSDTMSVMDQDAIRASMRKRGARATAGAGGRRGDTVE-----QRARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGETVEGLTYQQTLECIK 166
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A835ZA47_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA47_9STRA) HSP 1 Score: 214 bits (546), Expect = 8.330e-60 Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = 1 Query: 2155 MLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSI 2763
MLLER DEW G E+R ERA+V +VVD GPAQ GVTVGSKV VNGD+VEG+TY + L+ IK A RP+RV F RG +E NVG+ L+K G PRSY W+RRYFV+GGAVA+ +VLQ+Y SKQ++D +V+AVF+ + +RVKA KL + + PI+ K + G P PL+ F VK KQ+NFAS++L +L+ LR I
Sbjct: 1 MLLERKDEWVPGSEQRRERAVVSLVVDMGPAQGHGVTVGSKVLAVNGDSVEGMTYAEVLQAIKAAPRPMRVTFARGGGGEEANVGRCLYKTCAGAPRSYKVWKRRYFVIGGAVARPNVLQLYNSKQAFDHVVIAVFQRAPVTQRVKAVKLGSAWWTSPIRAKQYDGAP-PLHTFFVKKSGWHFKQMNFASESLPELERLREQI 202
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A7S3XPD0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPD0_HETAK) HSP 1 Score: 201 bits (510), Expect = 4.030e-53 Identity = 106/224 (47.32%), Postives = 150/224 (66.96%), Query Frame = 1 Query: 2116 EYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNV-GQILFKKTV-GVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTAT 2781
EY V F A KLGMLLER DEW G EKR E VKMVV+ A RGVTVGSK+ +NG TYQ+TLE +K RP+ V E + +++D G L+K +V G PR+Y W+RRY+V+GGAVA+ +VLQ+Y SK SY+++V+++F+ ++I +RVKA+KL+ FK IK K ++ TP+ +F +K PKSR+KQ+ FAS+N+ +Q L +F ++
Sbjct: 128 EYEVVFHEA-KLGMLLERRDEWKPGSEKRFETTTVKMVVEGQAAAARGVTVGSKILTINGQNCLRKTYQETLELVKTLPRPIFVVLEAPRDQEDDTTQGWCLYKSSVAGAPRAYEKWKRRYYVVGGAVARPNVLQIYESKTSYEQVVVSMFQQKKITQRVKAWKLTRKFKISGIKSKVYRTRATPVKYFALKSPKSRMKQICFASENMAGIQALYAHTKRFCSS 350
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A6U0X2E0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0X2E0_9STRA) HSP 1 Score: 175 bits (443), Expect = 7.690e-43 Identity = 91/224 (40.62%), Postives = 142/224 (63.39%), Query Frame = 1 Query: 2119 YIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTAT 2781
Y V F KLGMLLER D+W + K ER +VKMVV+ G A++RGV VGSK+ +NG+ V G Y QTL+ +K RPLRV FE + + G+IL KK +G P + ++W+ ++V+GGAVA+ +VLQ+Y SK Y+ +V+ +F+++ + + KAY+L F+CGP+++K + G + L +F +K P+S+ K L AS+N + L ++K ++
Sbjct: 267 YDVTFPHETKLGMLLERIDQWDETENKSKERTLVKMVVEGGAAEVRGVVVGSKIYSLNGENVVGKPYNQTLDMVKMLPRPLRVTFEYAGNYHDMSQGEILLKKDIGYHPPSAITSWKPVFYVIGGAVARENVLQLYQSKSEYESVVVNLFQDKTVKDFNFKAYRLDLSFRCGPVQIKEYPGRKS-LSWFWIKNPQSKTKVLKVASENSSVITALHNQVAKHVSS 489
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A6S8UPM6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UPM6_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.550e-39 Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 1 Query: 2104 GDTVEYIVEFERARKLGMLLERHDEWPDG-----REKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKF 2772
G Y V F+R KLGMLLER + G ++ R E+ +V MV++ G A +GV VGS++ +NG L Y + LE +K+ RPL + FE+ + G +L KK+ G P S + WQR +FV+GGAVAK HVLQ+Y SK Y+ +V+ +F+ + + + KAY LS FKC I+ K +KG P+ +F ++ P SR K + FASQN + L + +F
Sbjct: 197 GSLPTYTVTFDREAKLGMLLERRAAFAPGATAAQKKARPEQTVVTMVIEGGAAAQKGVAVGSRLLLINGQDATALPYARCLELVKSLPRPLHLVFEKSMAACDSAKGWVLVKKSAGSGPPSSMAGWQRMFFVVGGAVAKRHVLQLYSSKAQYEDIVVRMFQGQPLTGMKYKAYALSGTFKCSAIQSKVYKGEHQPVKYFALRNPYSRTKTMKFASQNPSIVAALHNHVMRF 427
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A8J2SCY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCY5_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.360e-37 Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 1 Query: 2104 GDTVEYIVEFERARKLGMLLERHDEWPDG-----REKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKF 2772
G Y V F+R KLGMLLER + G ++ R E+ +V MV++ G A +GV VGS++ +NG L Y + LE +K+ RPL + FE+ + G +L KK+ G P S + WQR +FV+GGAVAK HVLQ+Y SK Y+ +V+ +F+ + + + KAY LS FKC I+ K +KG P+ +F ++ P SR K + FASQN + L + +F
Sbjct: 424 GSLPTYTVTFDREAKLGMLLERRAAFAPGATAAQKKARPEQTVVTMVIEGGAAAQKGVAVGSRLLLINGQDATALPYARCLELVKSLPRPLHLVFEKSMAACDSAKGWVLVKKSAGSGPPSSMAGWQRMFFVVGGAVAKRHVLQLYSSKAQYEDIVVRMFQGQPLTGMKYKAYALSGTFKCSAIQSKVYKGEHQPVKYFALRNPYSRTKTMKFASQNPSIVAALHNHVMRF 654
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Match: A0A7S3JU79_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU79_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.620e-35 Identity = 86/231 (37.23%), Postives = 136/231 (58.87%), Query Frame = 1 Query: 2119 YIVEFERARKLGMLLERHDEWPDGREK------RSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRI-NERVKAYKLSNLFKCGPIKVKSFK--GHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTA 2778
Y V FE +KLGMLLER +W G++K + E +V MV+D G AQ +G+ +GS++ ++N + Y + L+ +K +RPL + FER + + G L +K+ G P S S+W++ YFV+GGAVAK +VLQ Y +K Y+ +V+ +F+N + + KAY +S+ FKC I KS+K G L +FT+K P S+ K + A++N L L + I ++ +
Sbjct: 208 YTVRFEHEQKLGMLLERRQDWTPGQKKDENNGDKIEDTVVTMVIDGGAAQSKGIVLGSRLIQINDMDATKMPYSKNLDLVKTLSRPLVLVFERSKASCDTAKGVCLIRKSAGTAPPSSISSWKQSYFVVGGAVAKRNVLQFYDNKALYEDIVVKMFQNHPVAGLKYKAYAISSTFKCSEILSKSYKSAGGNITLKYFTLKNPNSKTKTIKIAAENPSVLFALHSHIMRYAS 438 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17792.1 >prot_E-siliculosus-1a_M_contig99.17792.1 ID=prot_E-siliculosus-1a_M_contig99.17792.1|Name=mRNA_E-siliculosus-1a_M_contig99.17792.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=928bp MAQDPFQGWGRSQGGAGTVDPFGEFPFQMPTQQPQQQQQQQQQQQPQRQQback to top mRNA from alignment at E-siliculosus-1a_M_contig99:582774..595702- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17792.1 ID=mRNA_E-siliculosus-1a_M_contig99.17792.1|Name=mRNA_E-siliculosus-1a_M_contig99.17792.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12929bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:582774..595702- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:582774..595702- >mRNA_E-siliculosus-1a_M_contig99.17792.1 ID=mRNA_E-siliculosus-1a_M_contig99.17792.1|Name=mRNA_E-siliculosus-1a_M_contig99.17792.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5568bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:582774..595702- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |