mRNA_E-siliculosus-1a_M_contig99.17791.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: A0A6H5JFR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR6_9PHAE) HSP 1 Score: 792 bits (2045), Expect = 1.790e-284 Identity = 469/508 (92.32%), Postives = 476/508 (93.70%), Query Frame = 3 Query: 171 MRFAAAASATLAVAALAPPARAFVAQAPTGGATRFSRSSDGDVLVAGRRASVGRRPSEMAAAAKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPGAEEAPPGLADEVVSALPASTDYLIWVDSPEARAAAKVAKLEIGVLGSLLGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGGEEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRKSTAGMLRSGARPVAVAPTEAGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAADAAMXXXXXXXXXEXXAPREXAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKGRGRRSGGKRKSS 1694
MRFAAAASATLA+A LAP A+AFVAQAP GGATRFSRSS GDVLVA RRASVGRR SE+AAA KMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGP AEEAPPGLADEVVSALPAST+YLIWVDSPEARAAAK AKLEIGVLGSLLGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGG+EPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSW PAALRKSTAGMLRSGARPVAVAPTE GLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGK LSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAA+A XXXXXXXXX XX X VS XXXXXXXXXXXXXXX R+KGRGRRSGGKRKSS
Sbjct: 1 MRFAAAASATLALATLAPTAQAFVAQAPAGGATRFSRSSGGDVLVARRRASVGRRRSELAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPDAEEAPPGLADEVVSALPASTEYLIWVDSPEARAAAKAAKLEIGVLGSLLGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGGDEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWAPAALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKTLSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAEAXXXXXXXXXXXXXXXXXXXXVSAATXXXXXXXXXXXXXXXEGVPAAAP-RRKGRGRRSGGKRKSS 507
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: D7FWZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ9_ECTSI) HSP 1 Score: 402 bits (1033), Expect = 8.100e-135 Identity = 242/381 (63.52%), Postives = 245/381 (64.30%), Query Frame = 3 Query: 363 MAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPGAEEAPPGLADEVVSALPASTDYLIWVDSPEARAAAKVAKLEIGVLGSLLGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGGEEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRKSTAGMLRSGARPVAVAPTEAGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAADAAM 1505
MAIAGPGDDAKV+VCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ PEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWL DSWGPAALRKSTAGMLRSGARPVAVAPTE+GLELVWETLTDDLKAVQAGKLSLVV EEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAA+AAM
Sbjct: 1 MAIAGPGDDAKVMVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ--------------------------------------------------------------------------------------------------------------------------------------PEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLADSWGPAALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAEAAM 247
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: A0A835YZQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ9_9STRA) HSP 1 Score: 261 bits (666), Expect = 7.140e-77 Identity = 181/414 (43.72%), Postives = 236/414 (57.00%), Query Frame = 3 Query: 363 MAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPGAEEAPPGLADEVVSALPASTDYLIWVDSPEARAA-----AKVAKLEIGVLG--SLLGGGFKESLEAVRSVEGG---VRPVVVHAGRLFGAAGGEEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLING---SERKRGLELSVVSVDGFATTDEEWEEELKRL--DDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRKSTAGMLRSGARPVAVAPTEA----------GLELVWETLTDDLKAVQAGKLS-------------------LVVNEEP--AGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRK 1466
MA+AGP D V V GP GI+ +A RL A GG R +V + E L GA VVI + D G G+ A L + +LP+S YL++V E AA + AK GV G SL GG + L AVR + G + +V+H GRLFG A G +PVPFLTGPKAEP L+E R+A LVG GT+L+ AATKRA+ A A+ + + + RG E SVVS DG ++EEW EEL R+ D + G AV +IEFDA+ R+D L++WLT+SWGPA LR+ + M+RSGARPV A A G E++WE T +L+ G+L +++ +EP AG+R+VR G G PQ L GE+EIVQSLLEGIN VAY + +V RK
Sbjct: 5 MALAGPEDRMTVAVVGPKSGISQAVADRLMAEGGARNIVYLGD-EILGLGSSGASVVILAGDAGEGSAPADD-LVLRALPSLPSSLQYLLYVSPSEVEAAPAEDTSAGAKPSGGVAGLVSLFKGGPESPLTAVRQLTTGQSAAKVIVMHTGRLFGPAAGPDPVPFLTGPKAEPKLNECWARRAALVGVGTLLAQTRGAATKRATAAAAVAQYLRSGGVAPAARGAEFSVVSADGPPPSEEEWAEELARVGGDAAAGAAVLAIEFDAMPRRDALVQWLTESWGPATLRRVESNMIRSGARPVRAAALRAAPASAYAPGGGAEVIWEAPTRNLEVEVTGRLQPKAAAAQQQALIASRRSTQVLLRDEPGSAGMRVVRCDGAGAPQIVPLVGEDEIVQSLLEGINAVAYARGYVTRK 416
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: A0A7S2UTP4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTP4_9STRA) HSP 1 Score: 171 bits (433), Expect = 4.030e-43 Identity = 115/360 (31.94%), Postives = 205/360 (56.94%), Query Frame = 3 Query: 450 TAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPGAEEAPPGLADE-----VVSALPASTDYLIWVDSPEARAAAKVAKLEIGVLGSLLGGGFKES-LEAVRS--VEGGVRPVVVHAGRLFGAAGGEEPVPFLTGPKAEPVLDESITRQAVLV---GPGTVLSSPEDAATKRASVAEAIERLINGSERKRGLEL--SVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRKSTAGMLRSGARPVAV--APTEAGLELVWETLTDDLKAVQAGKLSLV--VNEEPAGI-RIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPK 1475
T + G + + + LEQ L GAKVV+ S+D G G E G ++ V+ ++P+ + ++ + E +A++ G+L +L KES ++A+ S + G R VV+ G LFG G+ P+PF+ GPKA P++++S T+++V+V G + T R+++A+A + ++R + +E+ S+VSV+G T ++W++E K L+D G V+ +E A++ K+ L+ + W P L M RSG RPV + AP++ +VWE+L +DL+A++ G L ++ V ++ +G+ R+VR G G + L GEEE++ + +EG+NT+A+ K F++++ K
Sbjct: 100 TPSTGSNSMDVFENPSALEQSLSGAKVVLVSADRGDG--EKGEGFQEQAFLTQVIQSIPSGVEAVVLLQPAEEDSASQG-----GLLSALFA---KESPMKALESGSEQKGFRRVVIEHGNLFGPPPGKAPLPFVNGPKAAPIIEDSYTKKSVVVLNSGSAGSVEVVRGGKTLRSTLAQAAVQAAQRNDRDKPMEIRFSLVSVEGSTPTKDDWDKEFKILEDPSGTQVYFVEASAVADKEGLLEFFETKWWPKTLNYLNVEMTRSGERPVRMITAPSKDQSSIVWESLDEDLRAIRTGTLDVIIEVEDDKSGVLRVVRTDGSGNARTTPLKGEEEVLSAFIEGVNTMAFGKGFLRKQKAK 449
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: A0A7S3XU61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU61_HETAK) HSP 1 Score: 163 bits (413), Expect = 7.340e-41 Identity = 129/336 (38.39%), Postives = 174/336 (51.79%), Query Frame = 3 Query: 495 ETLEQQLLGAKVVIGSSDGGPGAEEAP-----PGLADEVVSALPASTDYLIWVDSPEARAAAKVAKLEIGVLGSLLGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGGEEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLINGSE-RKRGLELSVVSV-DGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRK-STAGMLRSGARPVAVAPT-EAGLELVWETL-TDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAP 1472
E L + L GAKVVI D G E+ P L V+ A P S+ + + A+K K G+ GS +S E + GG V G LFGAA P PFLTGPKA P LDE++ ++ VL+ L+ A T R ++AEA+ RL G+ VVSV D A ++ +W +E RLD S G+ V+S EF ++ R RWL WGP L +R+GARP +V P E G + WETL ++ V G+L + V EPAG+ + R G G P L GEEEI+QSL+EG+NTVA+P+ +V + AP
Sbjct: 83 EALSKALAGAKVVITCGDCGLAKEDTPMTYEPDALLTRVIEAAPTSSKVIAVLP------ASKNKKDSGGLFGS-------KSPEEALAARGGT---AVGHGALFGAA--VAPPPFLTGPKAVPQLDEAVRKRGVLLSTSPALAL--SARTGRGALAEAVGRLAAGAAPAAAAAAFYVVSVEDRAAPSEAQWAKEFARLDASKGLQVYSAEFGSVDRA-AFPRWLRAKWGPKMLANLPVLDKIRTGARPTSVQPLGELGAAVQWETLDARTMEVVYPGRLEIQV--EPAGLTVTRTDGKGGPLSSILPGEEEIIQSLIEGLNTVAFPRGYVMKNAP 395
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: A0A7S2GEE9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GEE9_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.550e-37 Identity = 96/286 (33.57%), Postives = 156/286 (54.55%), Query Frame = 3 Query: 687 GVLGSL-LGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGGEEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDA---------ATKRASVAEAIERLI----NGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRKSTAGMLRSGARPVAVAPTEAGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAADAA 1502
G+LG L LG G S++A + +G V+ + GR+FG G EP+PF GP EPVLDE +AV++ L + +A T RA+++E I R++ +G K SV+S++G D+EW+++ +DD+ G+ + ++ F + + L+ WL + WGPAAL+ + + R+GARPV V T+ G + WE + + + G+L + +++ +R+VR G+P G +L GE+E++Q LLEGI T Y K++ R A A A
Sbjct: 117 GLLGGLQLGPGSWASVKAAAASKG-VKCYTLKHGRIFGGVPGAEPLPFQGGPMKEPVLDEHYVARAVMLSRSDALLNLNNANPLGKNMQVRTSRAALSETIYRVLLANKSGDASKIASAFSVLSIEGGFPGDDEWQQQFTSIDDARGIELLNVNFGKVLDRRGLVSWLENQWGPAALQTMSTYIRRTGARPVVVRATDTGAAVRWENMNSNFEMDFVGQLQIEISDSD--LRLVRADASGRPLGTSLPGEDELLQRLLEGIETTVYAKNYATRAGVLTGGAPAPVA 399
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Match: A0A7S1U791_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U791_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.260e-8 Identity = 106/403 (26.30%), Postives = 162/403 (40.20%), Query Frame = 3 Query: 393 KVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPGAEEAPPGLADEVVSALPASTDYLIWVDSPEARAAAKVAKLEIGVLGSLL------------GGGF-------KESLEAVRSVEGGVRPVVVHAGRLFGAAG-GEEPVPF----LTGPKAEPVLD----ESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLING------SERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQLMRWLTDSWGPAALRKSTAGMLRSGARPV-----AVAPTEAGLELVWETLTDDLKAVQAGKLSLVVNEEPAG---IRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPK 1475
+V V PGGI G + R+ A G +VL E + + GA V +G G G A D V A+ + + EA AAA A + G+ G+L GG F + +L+ R R VVH L G+AG G+ +PF L PK P E +A P L + T+RA+ +G ++ E++V+S+ G D +W +R + G + ++ A+ + +WLT + PA K A GARPV A A + +E++WETLT+DL+A AG + + G R G + L E+++++S +E +N K F PK
Sbjct: 19 RVAVLCQPGGI-GEVCARVLAESGANPLVLVQEPAAVS--VSGADVRVGDFRKGLGDFGASLDGVDSAVVAMDGAAADIAM--EREAFAAALQALPDSGLPGTLCAVVPSKEDENAGGGNFFNPAPTCEAALKKAREAGAARRVRVVHHAELVGSAGSGDGELPFDGPPLVAPKVNPAAALGGVELSGSRAPQPNPFVSLEAQRVCTTRRAAAQXXXXXXXSGPLAEALADAGEYAEVTVLSILGPQAQDADWARVCERYR-ARGPELLTLALPALE-ETPARKWLTQQF-PAQALKGVALFANQGARPVNARRTAGAGGDVEVEVLWETLTEDLRAEPAGSIVFSLKGAAGGGVEFSATRRGVRGDALAEPLQSEDDLLRSFIELLN-----KKFPAMNPPK 408 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17791.1 >prot_E-siliculosus-1a_M_contig99.17791.1 ID=prot_E-siliculosus-1a_M_contig99.17791.1|Name=mRNA_E-siliculosus-1a_M_contig99.17791.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=509bp MRFAAAASATLAVAALAPPARAFVAQAPTGGATRFSRSSDGDVLVAGRRAback to top mRNA from alignment at E-siliculosus-1a_M_contig99:572764..581510- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17791.1 ID=mRNA_E-siliculosus-1a_M_contig99.17791.1|Name=mRNA_E-siliculosus-1a_M_contig99.17791.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8747bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:572764..581510- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:572764..581510- >mRNA_E-siliculosus-1a_M_contig99.17791.1 ID=mRNA_E-siliculosus-1a_M_contig99.17791.1|Name=mRNA_E-siliculosus-1a_M_contig99.17791.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3054bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:572764..581510- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |