mRNA_E-siliculosus-1a_M_contig99.17778.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: D7FI52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI) HSP 1 Score: 275 bits (703), Expect = 2.500e-85 Identity = 152/156 (97.44%), Postives = 154/156 (98.72%), Query Frame = 2 Query: 575 MIQRVARAAATRGWAAAATRSVGASS-SSRRAFSDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
MIQRVARAAATRGWAAAAT SVGASS SSRRAFSDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEME+ELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRL+IKDQPVWGLTQEERELVKVAREKVNSC
Sbjct: 1 MIQRVARAAATRGWAAAATTSVGASSGSSRRAFSDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A835YHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.230e-37 Identity = 75/122 (61.48%), Postives = 97/122 (79.51%), Query Frame = 2 Query: 674 DNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
DNVTYSGGQ G QGGFYG+GGARS+A+P HHRPEA+A+ +DI RL+ M+ V ME EL + + ++ R+IE+K +KK LSSP M+ELL RLEI+ +PVWGLTQ+ER+LV+ AR KVN+C
Sbjct: 31 DNVTYSGGQEGTQGGFYGSGGARSKAAPNLHHRPEAVASQEDIERLKAVMEDVMGMESELAK-ANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A835Z526_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA) HSP 1 Score: 131 bits (329), Expect = 3.160e-32 Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 2 Query: 671 SDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
SDNVTYSGGQ GVQGGFYG+GGAR++A HHRPEA+AA++DI RL A+ ++ +IE+KS +KK LSSP M+ELL RLEI +PVWGLTQ ERE+V+ AR KVN+C
Sbjct: 4 SDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLS-AIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A7S2IEF3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.130e-26 Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 2 Query: 671 SDNVTYSGGQAGV-QGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
SDN+TYSGGQA QGGFYG+GG+R+ +P + HRPE A +D+ +L M V +E L + +V+ RSIEL+ +IKK ++SP +++ L RLEI+ +PVWGLT EER+LVK AR KVN C
Sbjct: 34 SDNITYSGGQATEGQGGFYGSGGSRASLTPASEHRPEMQAIAEDVTKLSSIMGEVETLE-HLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A4D9CV18_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.190e-25 Identity = 69/122 (56.56%), Postives = 87/122 (71.31%), Query Frame = 2 Query: 677 NVTYSGGQA-GVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
++TYSGGQA QGGFYGAGGAR+ + Q HRPEA+A DI+ LR M+ V E+EV+L R D++ + I +KSAIKK+ S M ELL RLE+K QPVWGL+ ER+LVK AR + NSC
Sbjct: 44 SITYSGGQATSGQGGFYGAGGARANKT-QTKHRPEAVAHAADIKSLRMLMEEVEELEVQL-RSADELP-KQISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A6S9H6B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.220e-24 Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 2 Query: 671 SDNVTYSGGQAGV-QGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDK----VSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
S+N+TYSGGQA QGG+YG+GG+R+ +P + HRPE +A D++ + M V +E L ++ ++ RSIEL+ +IKK ++SP ++E L RLEI+ +PVWGL+ +ER+LVK+AR K+N C
Sbjct: 38 SNNITYSGGQATEGQGGYYGSGGSRASLTPASEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A7S2R7N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.290e-22 Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 2 Query: 677 NVTYSGGQAGV-QGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRL----GDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
++TYSGG A QGGFYG+GGAR+ Q H PEAI + DIR L + M V+ +E +L G V+ +SIELK+AIK+++SS M +LL RLEI P WGL+ +ER+LV +AR+K N+C
Sbjct: 55 SITYSGGHASDGQGGFYGSGGARAGKEGQIAHHPEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A7S4K9H6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9H6_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.480e-21 Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 2 Query: 677 NVTYSGGQAGV-QGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDK----VSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
++TYSGGQA QGGFYG+GGA + + RPE +A D+ +++ MQ V +E L R ++ ++GRSIEL+S+IKK + +P E L RLEI+ PVWGL+ EER+L+ AREKVN C
Sbjct: 32 HITYSGGQATEGQGGFYGSGGAH-KITQDTEQRPEMLALAADVTKIQAVMQEVETLESLLDREKEESKGEITGRSIELRSSIKKLMVAPEFTECLNRLEIQGSPVWGLSSEERDLIHAAREKVNEC 156
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A1Z5KRA7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO) HSP 1 Score: 97.4 bits (241), Expect = 6.250e-20 Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 2 Query: 677 NVTYSGGQAGV-QGGFYGAGGARSQASPQAHH---RPEAIAAVDDIRRLREAMQHVSEMEVEL-GRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
++TYSGGQ QGGFY +GGARS A R IA D+ ++ + M V +E +L G V+ +SIELKSAIKK ++ P++LE L RLE++ QPVWGL+ EERE++ +AREKVN+C
Sbjct: 34 SITYSGGQPTEGQGGFYASGGARSNVDDYASDDETRGRMIALSQDVEKIEQVMTAVESLESQLLDNAG--VNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Match: A0A7S2SGA6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SGA6_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 6.970e-20 Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 2 Query: 671 SDNVTYSGGQAGV-QGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEVELGRLGDK----VSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 1039
S N+TYSGG A QGGFYG+GGAR HRP +A V D+ ++ M + +E L ++ ++G+ IE+KS IKK +S L+ L RLE+K +P+WGL+ +ERE++ AR+KVN C
Sbjct: 34 SGNITYSGGHAAEGQGGFYGSGGARVINPTSTEHRPGMMALVSDVETIQMVMDELHHLETILMETSEESNGEITGQLIEMKSKIKKLCTSSDFLDCLNRLELKGEPIWGLSSQEREMIMEARQKVNDC 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17778.1 >prot_E-siliculosus-1a_M_contig99.17778.1 ID=prot_E-siliculosus-1a_M_contig99.17778.1|Name=mRNA_E-siliculosus-1a_M_contig99.17778.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=156bp MIQRVARAAATRGWAAAATRSVGASSSSRRAFSDNVTYSGGQAGVQGGFYback to top mRNA from alignment at E-siliculosus-1a_M_contig99:423716..427708+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17778.1 ID=mRNA_E-siliculosus-1a_M_contig99.17778.1|Name=mRNA_E-siliculosus-1a_M_contig99.17778.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3993bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:423716..427708+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:423716..427708+ >mRNA_E-siliculosus-1a_M_contig99.17778.1 ID=mRNA_E-siliculosus-1a_M_contig99.17778.1|Name=mRNA_E-siliculosus-1a_M_contig99.17778.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:423716..427708+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |