mRNA_E-siliculosus-1a_M_contig99.17777.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: D7FI51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI51_ECTSI) HSP 1 Score: 617 bits (1592), Expect = 1.730e-218 Identity = 313/330 (94.85%), Postives = 318/330 (96.36%), Query Frame = 3 Query: 123 MLAHCTTALVLLGLPLGIQGFVPSLGNNAASANNGATTTPTPGTTAAVAGCRRRQHEHRIANGPSSSCPAPPAHARRAAPRPASPASLPEYFMALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP 1112
MLAHCTTALVLLGLPLGIQGFVPSL NNAA ANNGA TTPTPGTTAA GCRR QHEHRIA+G SSSC APPAHA RAAPRPASPASLPEYFMALFGGNKGSSAT+ SKA+ELEADLLSAI+GVQGRGRDV+QEQRELVDKAVEALESDGG PNAASSP VDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP
Sbjct: 1 MLAHCTTALVLLGLPLGIQGFVPSLANNAAGANNGAATTPTPGTTAAATGCRRWQHEHRIASG-SSSCRAPPAHAHRAAPRPASPASLPEYFMALFGGNKGSSATRASKAEELEADLLSAIKGVQGRGRDVTQEQRELVDKAVEALESDGGAPNAASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP 329
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A835Z824_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z824_9STRA) HSP 1 Score: 264 bits (674), Expect = 1.160e-81 Identity = 129/206 (62.62%), Postives = 156/206 (75.73%), Query Frame = 3 Query: 498 GRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF-SEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTP---PEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSER----LRIARGNKGTLFVLQR 1091
GRG+ V Q+E VD + LE+ GGVP+ A + +DG WRL++T+TPGTASP+QRSFV VD F+IYQ+I L+ ++ P TV NVVDFG RVG+L V ALAST RP++GFVPR+GDGR GLN+ GVSQT P P RIDF+FD+AGFD + LPF IPYPVPFR+ GDEVKGWID+TYLS + LRIARGNKGT FVL R
Sbjct: 3 GRGKGVEGAQKERVDSLIAELEASGGVPDGACADSIDGVWRLLYTSTPGTASPIQRSFVSVDAFSIYQNIALYGADAPATVANVVDFGARVGRLEVAALASTARRPLDGFVPRRGDGRILGLNVFGVSQTAEEGAPRRPGARIDFKFDDAGFDLKLLPFRIPYPVPFRILGDEVKGWIDITYLSRQPEGGLRIARGNKGTTFVLVR 208
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A4D9CNY0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNY0_9STRA) HSP 1 Score: 249 bits (636), Expect = 5.680e-75 Identity = 128/249 (51.41%), Postives = 167/249 (67.07%), Query Frame = 3 Query: 363 RPASPASLPEYFMALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF----SEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPED--PSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 1091
+P +P SLP +A + G+S E LL AI+G+ R S + + V ++ LE+ G+P A ++ ++G WRL++T++ TASP+Q +FVG FA+YQDID+ S P TVTN+VDFG +G L V ALASTP+RP+ F PR GDGRFFGLNILG+S+T P D P RIDF+FD AGFD LPF IPYPVPFRL DEVKGW++VTYLS RLR++RGNKGT+FVL++
Sbjct: 31 KPPTPTSLPAA-LASWPLTLGASRKSPRVLPNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQDIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPARPIPNFAPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEK 278
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A6V1SXP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SXP2_HETAK) HSP 1 Score: 248 bits (634), Expect = 9.580e-75 Identity = 122/207 (58.94%), Postives = 146/207 (70.53%), Query Frame = 3 Query: 471 LLSAIEGVQGRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 1091
LL + + RG E V + V LE G+P+ A P ++G WRL+ TTTPGTASP+QRSFVG F+++QDIDL PTV NVV+FG +G L V ALAST +RP+ GFVPR+GDG+ GLNI GVS T PP +P +RIDF+FD A FDF LPF IPYPVPFR GDEV GWID+TYLSE LRIARGNKGT F+LQ+
Sbjct: 68 LLETLAALTRRGAGADAAAAERVAEQVAVLERTQGIPDPADYPGLNGRWRLLHTTTPGTASPIQRSFVGAAAFSVFQDIDLARPDRPTVANVVEFG-SLGVLTVEALASTAARPLPGFVPRRGDGKILGLNIFGVSSTEPPANPKQRIDFKFDYAAFDFNFLPFAIPYPVPFRYLGDEVTGWIDITYLSESLRIARGNKGTTFILQK 273
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A5J4YBD5_9CHLO (Putative plastid-lipid-associated chloroplastic-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBD5_9CHLO) HSP 1 Score: 244 bits (624), Expect = 3.680e-71 Identity = 126/225 (56.00%), Postives = 156/225 (69.33%), Query Frame = 3 Query: 438 KTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQRPPSP 1103
K S KE LL AI V+GRG+ +S EQ ++ AVE+LE+D GV + SP ++G WRL+FTT PG+ASP+Q++FVGVD F +YQD+ L S V N+VDFG +VG L+V A AST S GFVPR+ G L + G S TPP P+ R+DFQFD+A F F ALPF IPYPVPF+L GDE KGWIDVTYLS+ +LR+ RGNKGTLFVL + PSP
Sbjct: 56 KRSSVKEARESLLGAITDVKGRGKSGMSPEQLSKLEAAVESLEADRGVSDPTKSPLLEGRWRLLFTTRPGSASPIQKTFVGVDAFTVYQDVLLSSAEKVRVNNIVDFGAKVGTLKVEAEASTDSNTRPGFVPRQKPG----LAVFGKSSNTPPVHPNMRVDFQFDKAAFAFSALPFKIPYPVPFKLLGDETKGWIDVTYLSQDGKLRLTRGNKGTLFVLLKDPSP 276
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A7R9VSS3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VSS3_9CHLO) HSP 1 Score: 242 bits (617), Expect = 3.230e-70 Identity = 125/238 (52.52%), Postives = 160/238 (67.23%), Query Frame = 3 Query: 390 EYFMALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRV-DGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQR 1091
E F L + S K + +A +L A+ GV+GRG+ +S+EQR ++ AVE LE+DGGV ++ DG WRL+FT+ PGTASP+Q +F GV+ F+++QD+ L E P + NVVDFGP VG LRV ALAST ++P+EGF PRKG GL G S PP+ P RIDFQFD+A F F+ +PF IPYPVPFRL GDE KGW+DVTY+S R++RGNKGTLFVL R
Sbjct: 34 EDFKTLSLRRRSGSRGPVGKVSDAQATILQALTGVKGRGKSGLSEEQRAAINAAVELLEADGGVGKPTRDEQLLDGRWRLLFTSRPGTASPIQNTFTGVEAFSVFQDVQLRGE-QPRIDNVVDFGPDVGYLRVEALASTDNKPLEGFTPRKG----AGLPFFGKSFVYPPQKPDMRIDFQFDKAAFYFKKVPFTIPYPVPFRLLGDETKGWLDVTYISRDGNFRLSRGNKGTLFVLVR 266
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A2P6TS10_CHLSO (Putative plastid-lipid-associated chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS10_CHLSO) HSP 1 Score: 246 bits (629), Expect = 5.930e-67 Identity = 130/234 (55.56%), Postives = 156/234 (66.67%), Query Frame = 3 Query: 399 MALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQR 1091
M L +A + K + + +L AI VQGRG+ ++ EQ+ D AV LE+DGG+ SP +DG WRL+FTT PGT+SP+QR+F VD F IYQDIDL E P V VVDFG VG LRV A AST SRP+ GF PR+G+G FG I+G S + PP P R+DFQFD A F F ALPF +PYPVPFRL GDE KGWIDVTYLS +LR+ RGNKGTLFVL +
Sbjct: 829 MTLAPSTVTQAAKPSRKVERAQQAVLDAIADVQGRGKGGMTPEQQAAFDAAVAVLEADGGMAAPTDSPLLDGRWRLLFTTRPGTSSPIQRTFTAVDSFKIYQDIDLAGE-QPRVCQVVDFGKNVGYLRVEAEASTDSRPLAGFTPRRGEGLPFG--IMGRSSSEPPARPGLRVDFQFDRAAFTFNALPFKVPYPVPFRLLGDEAKGWIDVTYLSPDGKLRLTRGNKGTLFVLAK 1059
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A2P6VFQ7_9CHLO (Putative plastid-lipid-associated chloroplastic isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFQ7_9CHLO) HSP 1 Score: 233 bits (595), Expect = 9.060e-67 Identity = 123/223 (55.16%), Postives = 153/223 (68.61%), Query Frame = 3 Query: 447 KAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPT-VTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQRPPSP 1103
K + + LL I GV+GRG+ ++ EQ+ D+AV LE+DGGV +SP +DG W L+FT+ PGTASP+QR+F VD ++YQDI++ E V+ VVDFG VG LRV A A+T SRP+ GF PR G G FG I+G S T PP P R+ FQFD A F +ALPF IPYPVPF+L GDE KGWIDVTYLS RLR++RGNKGTLFVLQ+ +P
Sbjct: 71 KLERAQQTLLGVIAGVEGRGKGGLTPEQQAAFDEAVAILEADGGVEAPTTSPLLDGRWALLFTSRPGTASPIQRTFTAVDSVSVYQDIEVGDECEQARVSQVVDFGSAVGFLRVEAEANTDSRPLPGFTPRVGQGLPFG--IMGKSSTGPPARPDMRVGFQFDRAAFTLKALPFKIPYPVPFKLLGDERKGWIDVTYLSPDGRLRLSRGNKGTLFVLQKEVAP 291
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A0D2MM87_9CHLO (Putative plastid-lipid-associated protein 12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM87_9CHLO) HSP 1 Score: 232 bits (592), Expect = 1.320e-66 Identity = 120/234 (51.28%), Postives = 159/234 (67.95%), Query Frame = 3 Query: 423 GSSATKTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVK------GWIDVTYLSE--RLRIARGNKGTLFVLQRPP 1097
G++ TK E +L A+ +GRG++ +S+E + + A+ LE DGGV + + +DG WRL++T+ PG+ASP+QR+F GV+ F IYQ++DL S++P V NVVDFG +G L V A AST SRP+EGF PR G+G FG ILG S TPP P+ RIDFQFD+A F F+ LPF+IPYPVPFR+ GDE K GWID TY+++ R+ARGNKGTLFVL + P
Sbjct: 12 GTTRTKAGSRATTELAVLDALRSAKGRGKEGLSEEALQQLSLAISVLEQDGGVADPTTLDAIDGKWRLLYTSRPGSASPIQRTFTGVEAFKIYQEVDLSSDLP-RVNNVVDFGEEIGYLIVQAKASTESRPLEGFTPRVGEGLPFG--ILGKSFNTPPARPNSRIDFQFDQAAFHFKFLPFSIPYPVPFRILGDERKARPPSPGWIDTTYMNQDGTFRLARGNKGTLFVLVKAP 242
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A7S1WYS5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYS5_9CHLO) HSP 1 Score: 233 bits (593), Expect = 1.400e-66 Identity = 115/218 (52.75%), Postives = 152/218 (69.72%), Query Frame = 3 Query: 441 TSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVL 1085
TSK K EA++L ++ +GRG+D +S EQ+E + A+ LE DGG+ +SP +DG W+L++T+ PG++SP+QR+F VD F ++Q++ L + N VDFG +VG LRV A A+T +RP+ GFVPR+G GL LG S T PP P++RIDFQFD A F+F LPF IPYPVPFRL GDE KGWIDVTY+S+ RI+RGNKGT FVL
Sbjct: 60 TSKVKRAEAEVLDILQSARGRGKDGLSSEQQEALAAAIYVLEEDGGLKAPTASPLIDGQWKLLYTSRPGSSSPIQRTFTAVDAFTVFQEVYLRQSDKARINNCVDFGEQVGILRVEAEANTDTRPIPGFVPRRG----AGLPFLGKSSTYPPSRPNQRIDFQFDRAAFNFYRLPFQIPYPVPFRLVGDEGKGWIDVTYMSKDGEFRISRGNKGTTFVL 273 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17777.1 >prot_E-siliculosus-1a_M_contig99.17777.1 ID=prot_E-siliculosus-1a_M_contig99.17777.1|Name=mRNA_E-siliculosus-1a_M_contig99.17777.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=331bp MLAHCTTALVLLGLPLGIQGFVPSLGNNAASANNGATTTPTPGTTAAVAGback to top mRNA from alignment at E-siliculosus-1a_M_contig99:418228..422942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17777.1 ID=mRNA_E-siliculosus-1a_M_contig99.17777.1|Name=mRNA_E-siliculosus-1a_M_contig99.17777.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4715bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:418228..422942+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:418228..422942+ >mRNA_E-siliculosus-1a_M_contig99.17777.1 ID=mRNA_E-siliculosus-1a_M_contig99.17777.1|Name=mRNA_E-siliculosus-1a_M_contig99.17777.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1986bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:418228..422942+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |