mRNA_E-siliculosus-1a_M_contig99.17775.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17775.1 vs. uniprot
Match: D7FI49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI49_ECTSI) HSP 1 Score: 569 bits (1467), Expect = 1.010e-201 Identity = 336/393 (85.50%), Postives = 346/393 (88.04%), Query Frame = 1 Query: 1 MDELMEGFVNGVKQVWAWVSNPFELCXXXXXXXXXXXXXXXX-SEEGDINLWHKDNNGGTTCVTTPAEGRVVAHGGLKKKNGKTDRLTAEALRSLNPAGLSECGGHRPAASHSSGETLDNSSQHSSDSSSHNAVGIRTRRNGRGDVGKRPSPGVRLSSGVDVIAEWDRHLARVNRDDDAKDGRGRATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAIGGSGXXXXXXXXXNDTIGRRGKGAGLKGDDGQPLMYGMRYIIASGRRGPKGIKGSGGAGLWREEXXXXXXXXAIPTLLDSGWKNGGGSRRRSRRATRTRTNAGYGGSDGDKSSSGATSREERELRRVLPDNSALRAQLFALAKGERRESLLFKRAFLNAERGCVSSRQ 1176
MDELME FVNGVKQVWAWVSNPFELCXXXXXXXXXXXXXXXX EEGDI+LWHKDNNGGTTCVTTPAEGRVV HGGL KKNGKT RLTAEALRSLNPAGLSECGG RPAASHSSGETLDNSSQHSS SSS+NAVGIRTRRNGRGDVGKRPS GV+ SSGVDVIAEWDRHLARV RDDDA+D RGRATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFA+G SG XXXXX TIGR GKG GLKGD GQPLMYGM+ I+ASGRRG KGIKGSG AGLW+E AIPTLLDSGWKNGGGSRRRSRRATRTR NAGYG DGDKSS GAT REE +L R PDNSALRA+LFALAKGERRESLLFKRAFLNAE G SRQ
Sbjct: 1 MDELMEDFVNGVKQVWAWVSNPFELCXXXXXXXXXXXXXXXXXDEEGDIDLWHKDNNGGTTCVTTPAEGRVVVHGGLTKKNGKTGRLTAEALRSLNPAGLSECGGRRPAASHSSGETLDNSSQHSSHSSSNNAVGIRTRRNGRGDVGKRPSRGVQFSSGVDVIAEWDRHLARVKRDDDAEDCRGRATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAMGDSGGXXXXXG----TIGRGGKGVGLKGD-GQPLMYGMKDIVASGRRGTKGIKGSG-AGLWKEAEDEEEDE-AIPTLLDSGWKNGGGSRRRSRRATRTRKNAGYG-DDGDKSSCGATCREEGKLGRGSPDNSALRAELFALAKGERRESLLFKRAFLNAEGGSAFSRQ 385
BLAST of mRNA_E-siliculosus-1a_M_contig99.17775.1 vs. uniprot
Match: D7G6S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S9_ECTSI) HSP 1 Score: 419 bits (1077), Expect = 1.270e-141 Identity = 289/453 (63.80%), Postives = 308/453 (67.99%), Query Frame = 1 Query: 1 MDELMEGFVNGVKQVWAWVSNPFELCXXXXXXXXXXXXXXXXSEE-GDINLWHKDNNGGTTCVTTPAEGRVVAHGGL-KKKNGKTDRLTAEALRSLNPAGLSECGGHRPAASHSSGETLDNSSQHSSDSSSHNAVGIRTRRNGRGDVGKRPSPGVRLSSGVDVIAEWDRHLARVNRDDDAKDGRGRATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAI----GGSGXXXXXXXXXNDTIGRRGKGAGLKGDDGQPLMYGMRYIIASGRRGPKGIKGSGGAGLWREEXXXXXXXX-AIPTLLD-----------------------------------------------------SGWKNGGGSRRRS-RRATRTRTNAGYGGSDGDKSSSGATSREERELRRVLPDNSALRAQLFALAKGERRESLLFKRAFLNAERGCVSSRQ 1176
MD LME VNGVKQ WVS PFE+C XXXXXXXXXXXX G I+LWHKDN+GGTTCVTTPAEGRVV HGGL KKK+ K RLTAEALRSLNP+GLS CGG RPAASHSSGETLDNSSQHSS S ++NAVGIR+ RNG +RPS GVR SSGVDVIAEWD HLA VN D + +DGRG ATITLGG D+VSVAED VTGPRRSFAQAP S SRAARFAI GG G NDTIGR GKG G GD GQPL YGM+ IIASG RG K +GLW EEXXXXXXXX AIPTLLD SGWK+GGGSRRR+ RRATR R +AG G D KS GA S EE +LRRV DNSALRA+LFALAKGERRESLLFKRAFLNAE G VSSRQ
Sbjct: 1 MDTLMEEIVNGVKQFCQWVSKPFEVCCCPGXXXXXXXXXXXXXXXXGGIDLWHKDNSGGTTCVTTPAEGRVVVHGGLEKKKDKKIGRLTAEALRSLNPSGLSACGGRRPAASHSSGETLDNSSQHSSHSLNNNAVGIRSARNGASK--RRPSHGVRFSSGVDVIAEWDLHLASVNHDHEEEDGRGTATITLGGADVVSVAEDPVTGPRRSFAQAPRSFSRAARFAIEYSRGGGGGVG------NDTIGRGGKGVGPYGD-GQPLTYGMKDIIASGDRGIKXXXXXXXSGLWGEEXXXXXXXXEAIPTLLDRYDGSLASLKSLVFPRSITDRPVKRLFDASVLASTSPAKSMTATELDVILGRLSGWKHGGGSRRRAARRATRARKSAGCGSRD--KSGCGAGSGEEGKLRRVSSDNSALRAELFALAKGERRESLLFKRAFLNAEGGSVSSRQ 442
BLAST of mRNA_E-siliculosus-1a_M_contig99.17775.1 vs. uniprot
Match: A0A6H5K951_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K951_9PHAE) HSP 1 Score: 355 bits (911), Expect = 3.310e-116 Identity = 240/466 (51.50%), Postives = 260/466 (55.79%), Query Frame = 1 Query: 130 EEGDINLWHKDNNGGTTCVTTPAEGRVVAHGGLKKKNGKTDRLTAEALRSLNPAGLSECGGHR--------------------------------------------------------------------------------------------PAASHSSGETLDNSSQHSSDSSSHNAVGIRTRRNGRGDVGKRPSPGVRLSSGVDVIAEWDRHLARVNRDDDAKDGRGRATITLGGDDIVSVAEDHVTGPRRSFAQAPCSLSRAARFAIGGSGXXXXXXXXXNDTIGRRGKGAGLKGDDGQPLMYGMRYIIASGRRGPKGIKGSGGAGLWREEXXXXXXXXAIPTLLDSG------------------------WKNG--GGSRRRSRRATRTRTNAGYGGSDGDKSSSGATSREERELRRVLPDNSALRAQLFALAKGERRESLLFKRAFLNAERGCVSSR 1173
EE I+LWHKDNNGGTTCVTTPAEGRVV GGLKKKNGKT R AE PAASHSSGETLDN+SQHS S+S NAVGIR+RRN R GK PS G + SSGVDVIAEWDRHLA+VNRDDDA+D RGRATITLGGDDIVS+AEDH T R SFAQAP LSRAARFAIGGSG +DTIGR GKGAGL + GQPLMYGM+ IIA GRRG KGIKGSG AGLWREE AIPTLLD ++ G +RRR RRA RTR NAG GG GDKSS G+TSREE +LRRV PDNSALR +LFA+ K ERR++LL KRA LNAE G VSSR
Sbjct: 6 EENHIDLWHKDNNGGTTCVTTPAEGRVVVRGGLKKKNGKTGRHAAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASHSSGETLDNNSQHSGHSNSSNAVGIRSRRNARCGAGKIPSRGDQFSSGVDVIAEWDRHLAKVNRDDDAEDRRGRATITLGGDDIVSMAEDHTTELRSSFAQAPRLLSRAARFAIGGSGSGDGG----DDTIGRGGKGAGLNAE-GQPLMYGMKDIIAPGRRGTKGIKGSG-AGLWREEEDGEENE-AIPTLLDRYDGSLASLESLVFPQSITDQPVKRLFEAGVLASTRRRPRRAIRTRKNAGCGGGGGDKSSCGSTSREEGKLRRVSPDNSALRVELFAITKDERRKALLSKRALLNAEGGSVSSR 464 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17775.1 >prot_E-siliculosus-1a_M_contig99.17775.1 ID=prot_E-siliculosus-1a_M_contig99.17775.1|Name=mRNA_E-siliculosus-1a_M_contig99.17775.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=393bp MDELMEGFVNGVKQVWAWVSNPFELCCCPGGRADDDDNGKGGSEEGDINLback to top mRNA from alignment at E-siliculosus-1a_M_contig99:404133..407258+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17775.1 ID=mRNA_E-siliculosus-1a_M_contig99.17775.1|Name=mRNA_E-siliculosus-1a_M_contig99.17775.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3126bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:404133..407258+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:404133..407258+ >mRNA_E-siliculosus-1a_M_contig99.17775.1 ID=mRNA_E-siliculosus-1a_M_contig99.17775.1|Name=mRNA_E-siliculosus-1a_M_contig99.17775.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2358bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:404133..407258+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |