mRNA_E-siliculosus-1a_M_contig99.17763.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.270e-60 Identity = 118/151 (78.15%), Postives = 124/151 (82.12%), Query Frame = 2 Query: 239 SERRRLRLPRRSKKWRALLHSGKSVSSRRLSASKQQLLPRRRRLLRA---WTTSTHL*RAEAEEGEVWAQLQSRMVLMLLFDLRKEGRPENEAVLQVARTFKIGHDKVRRINNHWWDHHQFYETTAAGRGKMTKKDDGQRRLTEAQEEDQL 682 SERRRLR PRRSKKWRA LHSGKSVSSRRLSA+KQQLL RRRRLL+ TS H + ++ EVW QLQSRMVLMLLFDLRK G ENEAVLQVARTFKIGHDKVRRINNHWWDH Q YETTA GRGK KKDDG+RRLTE QE DQL Sbjct: 7 SERRRLRSPRRSKKWRAPLHSGKSVSSRRLSATKQQLLARRRRLLKGLDYMDTSVH--EVKPKKDEVWTQLQSRMVLMLLFDLRKGGCCENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQE-DQL 154
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: D8LFT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT2_ECTSI) HSP 1 Score: 196 bits (497), Expect = 4.470e-57 Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 2 Query: 386 TSTHL*RAEAEEGEVWAQLQSRMVLMLLFDLRKEGRPENEAVLQVARTFKIGHDKVRRINNHWWDHHQFYETTAAGRGKMTKKDDGQRRLTEAQEEDQLPRVHRRRTQGRSSSLSPHGGRMDEQDLQHGAAVQPF 790 TS H + ++GEVW QLQSRMVLMLLFDLRK+GR ENEAVLQVARTFKIGHDKVRRINNHWWDH Q YETTAAGR K K+DDG R RVH+RR QGRSSSLSPHGGRMD QDLQHGAAVQPF Sbjct: 121 TSVH--EVKPKKGEVWTQLQSRMVLMLLFDLRKDGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRAKTAKEDDG-RTPPHRSTSRSTSRVHQRRAQGRSSSLSPHGGRMDAQDLQHGAAVQPF 252
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5JVE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE0_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.160e-42 Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 2 Query: 377 AWTTSTHL*RAEAEEGEVWAQLQSRMVLMLLFDLRKEGRPENEAVLQVARTFKIGHDKVRRINNHWWDHHQFYETTAAGRGKMTKKDDGQRRLTEAQEEDQL 682 AWTT T + ++E+GEV LQSR+VLMLLFDLRKEG ENE VLQVARTFKIGHDKVRRINNHWWDH Q YETTAAGRGK KKDDG+RRLT+AQE DQL Sbjct: 45 AWTTDTSVHEVKSEKGEVRTHLQSRIVLMLLFDLRKEGCSENEVVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKTAKKDDGRRRLTKAQE-DQL 145
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5JFH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH3_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.250e-39 Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 1 Query: 49 MAKPKGRRQPTGGAIGRPSKAGKRAKTAAARGALAQDRLQAELEQQRAALAADRAEMAQREQALRAKEXXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKVAQSLDYIDTSVK 405 MAKPKGRRQPTGGA+G PSK+ KR KTAAARGA AQD+ QAELEQQRAALAADRAEM QR+QALRAKE EMARAAAQRE XXX EVERVQAAAAA+AEKVAQSLDYIDTSV+ Sbjct: 1 MAKPKGRRQPTGGAVGSPSKSDKRVKTAAARGASAQDKHQAELEQQRAALAADRAEMVQRQQALRAKEAVVDKKEQEMARAAAQRENXXXXEVERVQAAAAASAEKVAQSLDYIDTSVQ 119
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5LQ06_9PHAE (PCIF1_WW domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ06_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.550e-39 Identity = 110/134 (82.09%), Postives = 116/134 (86.57%), Query Frame = 1 Query: 1 VVEYCTLEEGPLSHRPMAKPKGRRQPTGGAIGRPSKAGKRAKTAAARGALAQDRLQAELEQQRAALAADRAEMAQREQALRAKEXXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKVAQSLDYIDTSV 402 VVEYCTL+EGPLS+RPMAKPKGRRQPTGG +GRPSK+ KRAKTAAARG LAQ+RLQAELEQQRAALAADR XXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKVAQ LDY+DTSV Sbjct: 469 VVEYCTLKEGPLSYRPMAKPKGRRQPTGGVVGRPSKSDKRAKTAAARGPLAQERLQAELEQQRAALAADRXXXXXXXXXXXXXXXXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKVAQGLDYMDTSV 602
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 155 bits (393), Expect = 6.720e-39 Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 2 Query: 386 TSTHL*RAEAEEGEVWAQLQSRMVLMLLFDLRKEGRPENEAVLQVARTFKIGHDKVRRINNHWWDHHQFYETTAAGRGKMTKKDDGQRRLTEAQ 667 TS H + ++GEVW LQSRMVLMLLFDLRKEGR ENEAVLQVARTFKIGHDKVRRINNHWWDH Q YETTAAGRGKM K+DDG+RRLTE Q Sbjct: 120 TSVH--EVKPKKGEVWTHLQSRMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQ 211
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5JFT4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT4_9PHAE) HSP 1 Score: 142 bits (358), Expect = 2.850e-38 Identity = 95/118 (80.51%), Postives = 99/118 (83.90%), Query Frame = 1 Query: 49 MAKPKGRRQPTGGAIGRPSKAGKRAKTAAARGALAQDRLQAELEQQRAALAADRAEMAQREQALRAKEXXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKVAQSLDYIDTSV 402 MAKPKGRRQPTGG +GRPSK+ KRAKTAAARGALAQ+RLQAELEQQRAALAADRAEMA ALRAKE EMARAAAQREK QEVERVQAAAAAAA KVAQ LDY+DTSV Sbjct: 1 MAKPKGRRQPTGGVVGRPSKSDKRAKTAAARGALAQERLQAELEQQRAALAADRAEMAXXXXALRAKEAAFAKEQ-EMARAAAQREKCEQQEVERVQAAAAAAAGKVAQGLDYMDTSV 117
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE) HSP 1 Score: 151 bits (382), Expect = 3.750e-38 Identity = 104/134 (77.61%), Postives = 111/134 (82.84%), Query Frame = 1 Query: 1 VVEYCTLEEGPLSHRPMAKPKGRRQPTGGAIGRPSKAGKRAKTAAARGALAQDRLQAELEQQRAALAADRAEMAQREQALRAKEXXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKVAQSLDYIDTSV 402 VVEYCTL+EGPLS+RPMAKPKGRRQPTGG +GRPSK+ KRAKTAAARG LAQ+RLQAELEQQRAALAADR XXXXXXXXEMARAAA RE Q+VERVQAAAAAAAEKVAQ LDY+DTSV Sbjct: 21 VVEYCTLKEGPLSYRPMAKPKGRRQPTGGVVGRPSKSDKRAKTAAARGPLAQERLQAELEQQRAALAADRXXXXXXXXXXXXXXXXXXXXXXEMARAAAPREMREQQDVERVQAAAAAAAEKVAQGLDYMDTSV 154
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE) HSP 1 Score: 136 bits (343), Expect = 7.610e-33 Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 2 Query: 452 MVLMLLFDLRKEGRPENEAVLQVARTFKIGHDKVRRINNHWWDHHQFYETTAAGRGKMTKKDDGQRRLTEAQEEDQL 682 MVLMLLFDLRKEGR ENEAVLQVARTFKIGHDKVRRINNHWWDH Q YETTA GRGK KKDDG+RRLTE QE DQL Sbjct: 1 MVLMLLFDLRKEGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQE-DQL 76
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Match: A0A6H5KA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA27_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.340e-32 Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 1 Query: 4 VEYCTLEEGPLSHRPMAKPKGRRQPTGGAIGRPSKAGKRAKTAAARGALAQDRLQAELEQQRAALAADRAEMAQREQALRAKEXXXXXXXXEMARAAAQREKXXXQEVERVQAAAAAAAEKV 369 VEYCTLEEGPL +RPMAKPKGRRQPTG A+GRPSK+ KRAKTAAARG+LAQ+RLQAELEQQRAALAADR XXXXXXXX +ARAAAQRE XXXQEVERVQAAAAA AEKV Sbjct: 14 VEYCTLEEGPLIYRPMAKPKGRRQPTGDAVGRPSKSDKRAKTAAARGSLAQNRLQAELEQQRAALAADRXXXXXXXXXXXXXXXXXXXXXXXVARAAAQREXXXXQEVERVQAAAAAGAEKV 135 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17763.1 >prot_E-siliculosus-1a_M_contig99.17763.1 ID=prot_E-siliculosus-1a_M_contig99.17763.1|Name=mRNA_E-siliculosus-1a_M_contig99.17763.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=123bp MVLMLLFDLRKEGRPENEAVLQVARTFKIGHDKVRRINNHWWDHHQFYETback to top mRNA from alignment at E-siliculosus-1a_M_contig99:234931..236396+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17763.1 ID=mRNA_E-siliculosus-1a_M_contig99.17763.1|Name=mRNA_E-siliculosus-1a_M_contig99.17763.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1466bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:234931..236396+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:234931..236396+ >mRNA_E-siliculosus-1a_M_contig99.17763.1 ID=mRNA_E-siliculosus-1a_M_contig99.17763.1|Name=mRNA_E-siliculosus-1a_M_contig99.17763.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:234931..236396+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |