mRNA_E-siliculosus-1a_M_contig99.17758.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig99.17758.1
Unique Name	mRNA_E-siliculosus-1a_M_contig99.17758.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig99.17758.1 vs. uniprot
Match: D7FI30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI30_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.670e-36
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = 1

Query:  217 IAHVA-ISAKRAPATSRRIATASAAPARRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SSFLQRVAAFLTGAGVGCGVGYYHLSTEIKGSTAALEAAIAKNHSNLSDRLDKLEGK 561
            +A VA +S  RAPATSRRIATASAAPARRFL   XXXXXXXXXXXXXXXXXXXXXXXXX      SSFLQRVAAFLTGAGVGCGVGYYHLSTEIKGSTAALEAAIAKNHSN SDRLDKLEGK
Sbjct:    7 LARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTEIKGSTAALEAAIAKNHSNFSDRLDKLEGK 128

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig99.17758.1 vs. uniprot
Match: A0A6H5JK44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK44_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.470e-33
Identity = 105/187 (56.15%), Postives = 109/187 (58.29%), Query Frame = 1

Query:   16 AVQCIVMASINTLARVATVSVGRVLQRARGVMDMQQQLYCSCPLVLPLLSSPREPAEQGDAGQLPPEIAHVAISAKRAPATSRRIATASAAPARRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----SSFLQRVAAFLTGAGVGCGVGYYHLSTEIKGSTAALEAAIAKNHSNLSDRLDKLEGK 561
            AVQ IVMASINTLARVAT+SVGR                                                      AP +SR IATASAAPARRFL      XXXXX      XXXXXXXXX       SSFLQR AAFLTGAGVGCG+GYYHL+TEIKGSTAALEAAIAKNH NLSDRLDKLEGK
Sbjct:    8 AVQSIVMASINTLARVATMSVGR------------------------------------------------------APGSSRGIATASAAPARRFLSTTTSEXXXXXKHTPPSXXXXXXXXXAKTSSGGSSFLQRFAAFLTGAGVGCGLGYYHLATEIKGSTAALEAAIAKNHRNLSDRLDKLEGK 140

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig99.17758.1 vs. uniprot
Match: D7FL85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL85_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 7.990e-15
Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 1

Query:  217 IAHVA-ISAKRAPATSRRIATASAAPARRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SSFLQRVAAFLTGAGVGCGVGYYHLST 471
            +A VA +S  RAPATSRRIATASAAPARRFL   XXXXXXXXXXXXXXXXXXXXXXXXX      SSFLQRVAAFLTGAGVGCGVGYYHLST
Sbjct:    7 LARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLST 98

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig99.17758.1 vs. uniprot
Match: A0A835YZA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.600e-7
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1

Query:  391 SSFLQRVAAFLTGAGVGCGVGYYHLSTEIKGSTAALEAAIAKNHSNLSDRLDKLEGK 561
            SS  +R+A+FL GAGVG G+GYYHL++E++ STAAL  AI +    L  RL+K E K
Sbjct:   67 SSLRERLASFLVGAGVGLGLGYYHLNSEVEESTAALLTAIDR----LQTRLEKAERK 119

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig99.17758.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig99.17758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FI30_ECTSI	4.670e-36	86.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JK44_9PHAE	3.470e-33	56.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FL85_ECTSI	7.990e-15	83.70	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YZA6_9STRA	2.600e-7	54.39	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig99.17758.1	prot_E-siliculosus-1a_M_contig99.17758.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig99 187482..189702 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936569.2531252-UTR-E-siliculosus-1a_M_contig99:187448..187481	1622936569.2531252-UTR-E-siliculosus-1a_M_contig99:187448..187481	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig99 187449..187481 +
1696251135.5683022-UTR-E-siliculosus-1a_M_contig99:187448..187481	1696251135.5683022-UTR-E-siliculosus-1a_M_contig99:187448..187481	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig99 187449..187481 +
1622936569.325737-UTR-E-siliculosus-1a_M_contig99:189702..189751	1622936569.325737-UTR-E-siliculosus-1a_M_contig99:189702..189751	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig99 189703..189751 +
1696251135.628358-UTR-E-siliculosus-1a_M_contig99:189702..189751	1696251135.628358-UTR-E-siliculosus-1a_M_contig99:189702..189751	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig99 189703..189751 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936569.2682133-CDS-E-siliculosus-1a_M_contig99:187481..187531	1622936569.2682133-CDS-E-siliculosus-1a_M_contig99:187481..187531	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 187482..187531 +
1696251135.5875585-CDS-E-siliculosus-1a_M_contig99:187481..187531	1696251135.5875585-CDS-E-siliculosus-1a_M_contig99:187481..187531	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 187482..187531 +
1622936569.2831578-CDS-E-siliculosus-1a_M_contig99:187803..187965	1622936569.2831578-CDS-E-siliculosus-1a_M_contig99:187803..187965	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 187804..187965 +
1696251135.6015887-CDS-E-siliculosus-1a_M_contig99:187803..187965	1696251135.6015887-CDS-E-siliculosus-1a_M_contig99:187803..187965	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 187804..187965 +
1622936569.2970176-CDS-E-siliculosus-1a_M_contig99:188704..188930	1622936569.2970176-CDS-E-siliculosus-1a_M_contig99:188704..188930	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 188705..188930 +
1696251135.6102362-CDS-E-siliculosus-1a_M_contig99:188704..188930	1696251135.6102362-CDS-E-siliculosus-1a_M_contig99:188704..188930	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 188705..188930 +
1622936569.3114092-CDS-E-siliculosus-1a_M_contig99:189609..189702	1622936569.3114092-CDS-E-siliculosus-1a_M_contig99:189609..189702	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 189610..189702 +
1696251135.6185408-CDS-E-siliculosus-1a_M_contig99:189609..189702	1696251135.6185408-CDS-E-siliculosus-1a_M_contig99:189609..189702	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig99 189610..189702 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig99:187449..189751+
coding sequence from alignment at E-siliculosus-1a_M_contig99:187449..189751+

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17758.1

>prot_E-siliculosus-1a_M_contig99.17758.1 ID=prot_E-siliculosus-1a_M_contig99.17758.1|Name=mRNA_E-siliculosus-1a_M_contig99.17758.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=177bp
MASINTLARVATVSVGRVLQRARGVMDMQQQLYCSCPLVLPLLSSPREPA
EQGDAGQLPPEIAHVAISAKRAPATSRRIATASAAPARRFLSTTTSEAAA
AAEKPSPPSPPPPETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTEIKG
STAALEAAIAKNHSNLSDRLDKLEGK*

mRNA from alignment at E-siliculosus-1a_M_contig99:187449..189751+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig99.17758.1 ID=mRNA_E-siliculosus-1a_M_contig99.17758.1|Name=mRNA_E-siliculosus-1a_M_contig99.17758.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2303bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:187449..189751+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTGTGTGCAGTGTGCAGTGCAGTGCATCGTGATGGCTTCTATCAACAC
CCTCGCGAGAGTAGCTACGGTGTCGGTGGGGAGGTGAGGAAGAGCTTGAC
CCCCTCGTGAAATTTCGTTTTTGCCTTTCAATCCGCATGAAGGTCCATTG
CATTTTCCGCCGCTCTCCAGCAGGATAGTATACAAAGTAGGCAACATAGA
CTTGTACTGCTGTGCCTGTCACACAGCTTGTGCGTTCCACAGGTTCCAAG
AGATCTCACACCTCCAACTGATATCCTGGAGGGCGGGTGAGTTATTCACG
TTGTTTTCATGTATTGAGCAATACTTCGCCGCTTTTATTTGCCGCGCGTT
GAAAGGGTTCTCCAACGTGCAAGAGGTGTGATGGACATGCAGCAGCAGTT
GTACTGTAGTTGCCCCCTGGTTCTACCGCTGCTGTCAAGCCCTCGAGAGC
CAGCAGAGCAGGGTGATGCCGGCCAGCTCCCACCTGAGATAGCGCATGTT
GCAATCTCCGCGAAAAGGTTGTTGCAGGTGTTTAGCACAATCCGTTGACA
CCGAAGAGAGAAATCGAAGAGCAAATCGTTCTCATCCTAGCACAAGTCCC
GTCCGTTTTGATTAGAAGTTGCGTACCACCTGTCCGGGTTGCGAACGAGG
AGAACGGTGTCGTACTGCTGTTACCATGTACTCGTATATACATGTAGCAC
CGGCGTGCAAGCCTGCCGCGAGTTCAGCAACTCTCGTATGATACTGCTGT
TACCATGTACTCGTATATTCATGTGGCACCGGTGTGCAAGCCTGCCGCGA
GTTCGGCAACTCTTACTTTTGTTTTGATCGAAGTAGGTTTGCTTTATGTC
GACGGAAGGAGCAAGCACGTATACGGATCGCCAACACAAAATGGAAGTGA
ACCTCAAGCATGTCCGCCGTGGAACTTTCAGCCGACTCAACAACAACGCC
GCTTACCTTGTGCGACTACAATATCGACACCGTCTACCACACAAGATAAC
AAAGGTCACAAAAGTTCGCACTACGTCGCGGTTGTATTTTTGTAACCCAC
CATGAGAGCCCGGTTAAATCACTTAGCACTATTGAAGATGACAGAAGATA
ACACCCACCCACGTGCCACCGAGTGATGTTTTTTTTCTAGCGCAAGATAA
AAGCGAAAGTGTCACCGGCGGGGTGTGTTATCCTGCGTAGTATTCGGCCG
TACTTTAATACTAGTCCCTGCCGTTGGCCGTTGCTGTCCCGTCGTGTTCA
TCGCAGGGCGCCGGCGACGTCCCGAAGGATCGCTACTGCCTCCGCGGCGC
CGGCACGGCGCTTCCTGTCAACAACAACAAGTGAGGCCGCTGCCGCCGCT
GAGAAGCCTTCCCCGCCGTCGCCGCCGCCGCCGGAGACCAGCAGCGGGGG
TTCGTCTTTCCTACAGCGAGTCGCGGCGTTTTTGACCGGGGCTGGGGTGG
GTTGCGGGGTCGGTTACTACCACCTGTCGACGGTGAGAGGGATGGACCGG
CCCATATACCGTTGGCGCCCGCACTGCTAGTTTTGGCCGGCCCATACACC
GTTAGCGCCCGCACTACTAGTCGAGTCTGGGCTTCTTAGTGCCTGGGGCT
ATCCGCAAAATGGCCGCTAGGGGTTCTTAACCGATATCACAAACGATGCT
CAAGCTCTTGGATTATTTAGCGTTTGTTTTCTCCACTTCTTGACTACCAA
GTTCTGAAGTGCCGGCGCCAAACCGCGTATGTGTACGACCTGTTGGAAAA
ATGCCTCGCCGGGATTCGAGCCGTCGTCCTCCCCCACTGATGGTTCTTGT
TGTTCTCCATTGTTCCCGACCTGCTCGTTGTAACGCTCGCGAAAACCAGC
CGTGTTGTGTAGTGTTTGCCTTCGGCACCGTCTACCGGTCAGATGCTGCT
TTCGCTCCGTGCATACCGTACATGCTTGACCGTTTATGCCACCCCCCCCC
CGCGCGCCATGCCCGCTGAAGCGGCTTGCTTTTCGTGCATTTTCTCGATT
CCCAAGTTCTCTTGTTGCGGCCACCCGGTGTTCCCTCGCCGAAAAACGTT
TCGACATCCGGTGTCTTTCGTCCAATAAAGCGTGGCACGCACACCGTAAA
CGTCGCGTACATTTATTTTTCCCTATTTGTTTTTCTCTCATTTTTTTTTT
TTTGTTTTCAGGAGATTAAGGGTTCCACGGCAGCGTTGGAGGCGGCAATT
GCCAAAAACCACAGCAATCTCAGCGATAGACTCGACAAGCTCGAGGGGAA
GTAAGAATAGCACCTAGGAGGTAGCGGCTCCGCCGAGGGGGCAGACCCGG
CGG

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:187449..189751+

>mRNA_E-siliculosus-1a_M_contig99.17758.1 ID=mRNA_E-siliculosus-1a_M_contig99.17758.1|Name=mRNA_E-siliculosus-1a_M_contig99.17758.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1062bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:187449..189751+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTTCTATCAACACCCTCGCGAGAGTAGCTACGGTGTCGGTGGGGAG
ATGGCTTCTATCAACACCCTCGCGAGAGTAGCTACGGTGTCGGTGGGGAG
GGTTCTCCAACGTGCAAGAGGTGTGATGGACATGCAGCAGCAGTTGTACT
GTAGTTGCCCCCTGGTTCTACCGCTGCTGTCAAGCCCTCGAGAGCCAGCA
GAGCAGGGTGATGCCGGCCAGCTCCCACCTGAGATAGCGCATGTTGCAAT
CTCCGCGAAAAGGGTTCTCCAACGTGCAAGAGGTGTGATGGACATGCAGC
AGCAGTTGTACTGTAGTTGCCCCCTGGTTCTACCGCTGCTGTCAAGCCCT
CGAGAGCCAGCAGAGCAGGGTGATGCCGGCCAGCTCCCACCTGAGATAGC
GCATGTTGCAATCTCCGCGAAAAGGGCGCCGGCGACGTCCCGAAGGATCG
CTACTGCCTCCGCGGCGCCGGCACGGCGCTTCCTGTCAACAACAACAAGT
GAGGCCGCTGCCGCCGCTGAGAAGCCTTCCCCGCCGTCGCCGCCGCCGCC
GGAGACCAGCAGCGGGGGTTCGTCTTTCCTACAGCGAGTCGCGGCGTTTT
TGACCGGGGCTGGGGTGGGTTGCGGGGTCGGTTACTACCACCTGTCGACG
GGCGCCGGCGACGTCCCGAAGGATCGCTACTGCCTCCGCGGCGCCGGCAC
GGCGCTTCCTGTCAACAACAACAAGTGAGGCCGCTGCCGCCGCTGAGAAG
CCTTCCCCGCCGTCGCCGCCGCCGCCGGAGACCAGCAGCGGGGGTTCGTC
TTTCCTACAGCGAGTCGCGGCGTTTTTGACCGGGGCTGGGGTGGGTTGCG
GGGTCGGTTACTACCACCTGTCGACGGAGATTAAGGGTTCCACGGCAGCG
TTGGAGGCGGCAATTGCCAAAAACCACAGCAATCTCAGCGATAGACTCGA
CAAGCTCGAGGGGAAGTAAGAGATTAAGGGTTCCACGGCAGCGTTGGAGG
CGGCAATTGCCAAAAACCACAGCAATCTCAGCGATAGACTCGACAAGCTC
GAGGGGAAGTAA