mRNA_E-siliculosus-1a_M_contig99.17752.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17752.1 vs. uniprot
Match: D7FI23_ECTSI (DUSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI23_ECTSI) HSP 1 Score: 502 bits (1293), Expect = 4.500e-169 Identity = 276/293 (94.20%), Postives = 280/293 (95.56%), Query Frame = 2 Query: 221 MGNCGAKTAVAKQQDMEDAFPSELTFRKKAELQDVLDADGIAREEGDPWLVVEAAWVQRWLAFVQGDDSARKPGPIQNETLLVHDPASKAWVPKPLLRAARREHMGHYRRVNPHVWKKWAGTYHGSGPAIWVDKEPFEDTSNWQVDPAFDGVSKGRSSRGFGGSQGGKGWEKTGSAPGQPVVAHSLAIGEMEDEGVGEETTAQAAAFFDVTLDSPRVSASGXXXXXXXXXXXXXXXXXXXXXXXXXXX--RPVRDPRSTSSSGGGDGDKLDRESTAAEMWMYGDDAATGPAQE 1093
MGNCGAKTAVAKQQDMEDAFPSELTFRKKAELQDVLDADGIAREEGDPWLVVEAAWVQRWLAFVQGDDS +KPGPIQNETLLVHDPASKAWVPKPLLRAARREHMGHYRRVNPHVWKKWAGTY GSGPAIWVDKEPFEDTSNWQVDPAFDGVSKGRS RGFGGSQGG+GWEKTGSAPGQPVVAHSLAIG+MEDEGVGEETTAQAAAFFDVTLDSPRVSASGXXXXXXXXXXX XXXXXXXXXX RPVRDPRSTSS GGGDGDKL+RESTAAEMWMYGDDAATG AQE
Sbjct: 1 MGNCGAKTAVAKQQDMEDAFPSELTFRKKAELQDVLDADGIAREEGDPWLVVEAAWVQRWLAFVQGDDSVKKPGPIQNETLLVHDPASKAWVPKPLLRAARREHMGHYRRVNPHVWKKWAGTYRGSGPAIWVDKEPFEDTSNWQVDPAFDGVSKGRSGRGFGGSQGGEGWEKTGSAPGQPVVAHSLAIGDMEDEGVGEETTAQAAAFFDVTLDSPRVSASGXXXXXXXXXXXVIATSPXXXXXXXXXXXGRPVRDPRSTSS-GGGDGDKLERESTAAEMWMYGDDAATGSAQE 292
BLAST of mRNA_E-siliculosus-1a_M_contig99.17752.1 vs. uniprot
Match: A0A7S1UJU2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJU2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.120e-15 Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 290 LTFRKKAELQDVLDA-DGIAREEGDPWLVVEAAWVQRWLAFVQGDDS-ARKPGPIQNETLLVHDPASKAWVPKPLLRAARREHMGHYRRVNPHVWKKWAGTYHGSGPAIWVDKEPFEDTSNWQVDPAF 667
LT K+ Q+ + + A+E GDPW +VEAAWV WLA+V + + +PGPI N LL D K +V + LRA H GH+R V P VWK + Y SGP I+ + F T NW VD +
Sbjct: 221 LTLGGKSSAQETVKTKEEFAQELGDPWFIVEAAWVTSWLAYVHVEAGISPRPGPIYNMGLLHFDEDGK-FVARKNLRADSGNHRGHFRAVKPAVWKAYVDFYPESGPFIFC-RGDFTQTDNWYVDVGY 346 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17752.1 >prot_E-siliculosus-1a_M_contig99.17752.1 ID=prot_E-siliculosus-1a_M_contig99.17752.1|Name=mRNA_E-siliculosus-1a_M_contig99.17752.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=292bp MGNCGAKTAVAKQQDMEDAFPSELTFRKKAELQDVLDADGIAREEGDPWLback to top mRNA from alignment at E-siliculosus-1a_M_contig99:112150..119316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17752.1 ID=mRNA_E-siliculosus-1a_M_contig99.17752.1|Name=mRNA_E-siliculosus-1a_M_contig99.17752.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7167bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:112150..119316- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:112150..119316- >mRNA_E-siliculosus-1a_M_contig99.17752.1 ID=mRNA_E-siliculosus-1a_M_contig99.17752.1|Name=mRNA_E-siliculosus-1a_M_contig99.17752.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1752bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:112150..119316- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |