mRNA_E-siliculosus-1a_M_contig99.17751.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17751.1 vs. uniprot
Match: D7FI22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI22_ECTSI) HSP 1 Score: 676 bits (1743), Expect = 1.590e-225 Identity = 453/620 (73.06%), Postives = 470/620 (75.81%), Query Frame = 1 Query: 1063 KGPAALRLDWKDLIYGDTGEGEDDVGGPESPEDPNDSLHAGISLADLEKIHVDLTALRDKAALSIPRSTTSRGRVAKVRIDAILHALESWWWSEEAGRGRRSVFRGGFGDCAGASSTLSASMTLXXXXXXXFSSLTPEEVEAVIVYVDKDQSGEVDAREFQAAISAAKQGKIPDQGLAGCIRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRKQQQKSKEDGKRAKVAAFLTSMDSLQEESLRERDFFATEVTDEKLFQDLVRRISNETGYETDDXXXXXXXTDETDEYNXXXXXXXXXXX------CEGVFDRHRAEKTKDSNRTRXXSITRSRAGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDDGRDKHGQGHPRTACDHGSPGDNGGADEWRWEGGEKEPKXXXXXXXXXXXHEKIIRPIFAFRAQDATLDQLRHDVSARRKAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEFLGTLDQPVALREEEDDVGVVGVGVDGVVGGDGEAEAPSAXXXXXXGARVLAGHVDDDDEAGGSAEGNRTYLSDATGFEDSSRGPAAASSSSLGEADAV 2904
KGPAA LDWK LIYGD GEG+DDVGGPESPE PNDSLHAGI LADLEKIHV+LTALR+KA LSIPRST SRGRVAKVRIDAILHALES WWSEEAGRG +FRG FGDCAGASSTLSASMTL SSLT EEVEAVIVYVDKDQSGEVDAR+FQAAISAAKQGKIPDQGLAG IRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRK+QQKSKEDGKRAKVAAFLTSM SLQEESLRER+FFATEVTDE LFQD+V+RISNETGYETDD ETD XXXXXXXXXXX CEG FD SPGDNGGADEWRWE G+K PK XXXXXXXXXXHE+++RP+ AFRAQD TLDQLRHDVSARRKAAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E LGTLDQPVA EEED VGVVGV VDGVVGGDGEA+ PS G RVLAGHVDDDDEAGGSAEG+RTY SDATGFE+ S GPAA SSSSLGEADAV
Sbjct: 75 KGPAAPLLDWKGLIYGDGGEGDDDVGGPESPEGPNDSLHAGIGLADLEKIHVELTALREKAELSIPRSTISRGRVAKVRIDAILHALESGWWSEEAGRGSMRIFRGSFGDCAGASSTLSASMTLSSSSSS-LSSLTLEEVEAVIVYVDKDQSGEVDARDFQAAISAAKQGKIPDQGLAGSIRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRKEQQKSKEDGKRAKVAAFLTSMGSLQEESLREREFFATEVTDEDLFQDIVQRISNETGYETDDY--------ETDXXXXXXXXXXXXXXXXXXXXCEGSFD--------------------------------------------------------------------------------SPGDNGGADEWRWEEGKKGPKKXXXXXXXXXXHEQMMRPVIAFRAQDVTLDQLRHDVSARRKAAAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLGTLDQPVAFGEEEDHVGVVGVDVDGVVGGDGEAKVPSVAAEGGAGPRVLAGHVDDDDEAGGSAEGSRTYPSDATGFENYSGGPAAPSSSSLGEADAV 605
BLAST of mRNA_E-siliculosus-1a_M_contig99.17751.1 vs. uniprot
Match: A0A6H5JFH1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH1_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.530e-20 Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 1 Query: 1591 LAGCIRRINDMLRLHNLRIRDVFHVM------DSDGSGKLSHRELAQGLSLLYEHDR 1743
+AGCIRRINDMLRLHNLRIRDVFHVM DSDGSGKLSHREL QGLS LYEHDR
Sbjct: 1 MAGCIRRINDMLRLHNLRIRDVFHVMVRGRMPDSDGSGKLSHRELTQGLSQLYEHDR 57 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17751.1 >prot_E-siliculosus-1a_M_contig99.17751.1 ID=prot_E-siliculosus-1a_M_contig99.17751.1|Name=mRNA_E-siliculosus-1a_M_contig99.17751.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1290bp MRPSNSGDDDKDANTTPAAADVSAATVSYRDCCLSLSHLYHRLNIWPLQDback to top mRNA from alignment at E-siliculosus-1a_M_contig99:101614..110738+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17751.1 ID=mRNA_E-siliculosus-1a_M_contig99.17751.1|Name=mRNA_E-siliculosus-1a_M_contig99.17751.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9125bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:101614..110738+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:101614..110738+ >mRNA_E-siliculosus-1a_M_contig99.17751.1 ID=mRNA_E-siliculosus-1a_M_contig99.17751.1|Name=mRNA_E-siliculosus-1a_M_contig99.17751.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7740bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:101614..110738+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |