mRNA_E-siliculosus-1a_M_contig99.17740.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI) HSP 1 Score: 445 bits (1144), Expect = 2.720e-141 Identity = 229/250 (91.60%), Postives = 237/250 (94.80%), Query Frame = 2 Query: 1637 MAPVSTAPKRIRVSSISKVKKQITTLEKPNFNANEVERATKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 MAPVS APKRI+VSSISK KKQITTL+KPNFNANEV+RATK+ TSFKCPVSPKKIFL PTD QVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGR QLEQRREALTRLQRVGSA SVFHGLPY VDKSKSILQFM MDFDDDDSRQRFFLQRDFA ISGKRGET+SSSVY + S+AIGLMWFA VILGRPTAFESVVLPLNV+ERRVL Sbjct: 1 MAPVSPAPKRIKVSSISKAKKQITTLQKPNFNANEVKRATKETTSFKCPVSPKKIFLEPTDGQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRNQLEQRREALTRLQRVGSARSVFHGLPYGVDKSKSILQFMKMDFDDDDSRQRFFLQRDFATISGKRGETSSSSVYASCSSAIGLMWFATVILGRPTAFESVVLPLNVMERRVL 250
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE) HSP 1 Score: 453 bits (1165), Expect = 7.040e-138 Identity = 234/250 (93.60%), Postives = 240/250 (96.00%), Query Frame = 2 Query: 1637 MAPVSTAPKRIRVSSISKVKKQITTLEKPNFNANEVERATKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 MAPVSTAPKRI+VSSISKVKKQITTLEKPNFNANEV+RATK TSFKCPVSPKKIFL PTD QVRQFYGARNFSGTPYDRLPQAE LAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSA SVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFA ISGKRGET+SSSVY + S+AIGLMWFA VILGRPTAFESVVLPLNV+ERRVL Sbjct: 1 MAPVSTAPKRIKVSSISKVKKQITTLEKPNFNANEVKRATKDTTSFKCPVSPKKIFLEPTDGQVRQFYGARNFSGTPYDRLPQAENLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSARSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFATISGKRGETSSSSVYASCSSAIGLMWFATVILGRPTAFESVVLPLNVMERRVL 250
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: B2KWI7_ECTSI (EsV-1-213-like protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI7_ECTSI) HSP 1 Score: 241 bits (616), Expect = 7.600e-66 Identity = 127/247 (51.42%), Postives = 172/247 (69.64%), Query Frame = 2 Query: 1649 STAPKRIRVSSISKVKKQITTLEKPNFNANEV-ERATKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 S A KR +VS S K+ +TTL+ F+ +V E T +F+CPV+ +F APT QV+ FY +R+ G P+D LP+ EKLAW ES DN TL+GF VY+QLFP LL+NRIKLN A++H+ +D ++ +GR +LEQRR A+ RL+R GS SVF GLPY+VD S +IL FM MD +++D R RFF +R+F+ I KRGE +SSSVY + S A+ L+WFA +L RP ES++LPL+V ERR + Sbjct: 4 SRANKRAKVS--SSAKEPVTTLDNKAFDEKDVAESKTHTKMTFRCPVTIDNVFTAPTATQVKVFYESRSSKGEPFDHLPEGEKLAWTESFHDNKTLMGFIVYTQLFPKLLQNRIKLNAATYHWAHLDNSSEKGRTKLEQRRNAVDRLKRNGSTRSVFMGLPYTVDTSANILTFMKMDVEEEDERFRFFTKREFSMIFSKRGEVSSSSVYASCSMALSLLWFATAVLARPCCLESIILPLSVTERRAM 248
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE) HSP 1 Score: 238 bits (608), Expect = 4.650e-64 Identity = 125/247 (50.61%), Postives = 169/247 (68.42%), Query Frame = 2 Query: 1649 STAPKRIRVSSISKVKKQITTLEKPNFNANEV-ERATKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 S A KR++VS S K+ +TTL+ F+ E+ E T +F+CPV+ +F APT QV+ FY +R+ G P+D LP+ EKLAW ES DN TL+GF VY+QLFP LL+NRIKLN A++H+ +D ++ +GR +LEQRR A+ RL+R G SVF GLPY VD S IL +M MD +++D R RFF +R+F+ I KRG+ SSSVY + S A+ L+WFA IL RP ES++LPL+V ERR + Sbjct: 4 SRANKRVKVS--SSAKESVTTLDNKAFDEKELAESKTHTKMTFRCPVTIDNVFTAPTSTQVKVFYESRSSKGEPFDHLPEGEKLAWTESFHDNKTLMGFIVYTQLFPKLLQNRIKLNAATYHWAHLDNSSEKGRTKLEQRRNAVDRLKRNGFTRSVFMGLPYRVDTSADILAYMKMDVEEEDERFRFFTKREFSMIFSKRGQVGSSSVYASCSMALSLLWFATAILARPCCLESIILPLSVTERRAM 248
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE) HSP 1 Score: 229 bits (584), Expect = 9.260e-61 Identity = 123/247 (49.80%), Postives = 165/247 (66.80%), Query Frame = 2 Query: 1649 STAPKRIRVSSISKVKKQITTLEKPNFNANEV-ERATKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 S A KR +VS S K+ +TTL+ F+ +V E T +F+CPV+ +F APT QV FY + + G P+D LP+ EKLAW ES DN TL+GF VY+QLFP LL+NRIKLN A++H+ +D ++ +GR +LEQRR A+ RL+R G SVF GLPY VD S IL +M MD +++D R RFF +R+F+ I KRG+ SSSVY + S A+ L+W A IL RP ES++LPL+V ERR + Sbjct: 4 SRANKRAKVS--SSAKEPVTTLDTKAFDEKDVAESKTHTKMTFRCPVTIDNVFTAPTATQVNVFYESSSSKGEPFDHLPEGEKLAWTESFHDNKTLMGFIVYTQLFPKLLQNRIKLNAATYHWAHLDNSSEKGRTKLEQRRNAVDRLKRNGFTRSVFMGLPYRVDTSAHILAYMKMDVEEEDERCRFFTKREFSMIYSKRGQVGSSSVYASCSMALSLLWVATAILARPCCLESIILPLSVTERRAM 248
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: Q8QN77_ESV1K (EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K) HSP 1 Score: 220 bits (560), Expect = 2.270e-57 Identity = 123/247 (49.80%), Postives = 166/247 (67.21%), Query Frame = 2 Query: 1649 STAPKRIRVSSISKVKKQITTLEKPNFNANEVERATKKN-TSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 S A KR ++SS + +TTL + F+ ++V + + ++K PV+ K +F PT+ QV+ FY ARN SG P+DRL AEKL W ESL DN L+G+ VYSQL P ENR+KL S H+ +++ +T R LEQRR A RL+R GS S F+GLPYSVD +K++L++MN+DF+ D R RFFL R+FA S + G+ N+SSVY + S A+ LM+F VVILGRP ESV+LPL+V ER VL Sbjct: 3 SQATKRTKLSSSA----GLTTLLRAGFDPSDVATLSPRTKVTYKSPVTLKNVFERPTESQVKVFYHARNHSGVPFDRLSDAEKLTWTESLHDNSCLMGYLVYSQLLPCAAENRVKLKSGSAHWNELNVSTDRAR--LEQRRAAYDRLRRNGSTLSAFYGLPYSVDMTKNVLEYMNIDFEQSDLRHRFFLGREFAMTSSEHGKMNASSVYTSCSKALSLMYFTVVILGRPCCLESVILPLSVTERSVL 243
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.060e-56 Identity = 117/230 (50.87%), Postives = 157/230 (68.26%), Query Frame = 2 Query: 1703 ITTLEKPNFNANEV-ERATKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARN-FSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 ITTL+ +FN N+V E T +F+CPV+ +F APT QV+ FY +R SG P+ LP+ E LAW ES DN TL+GF VYSQLFP LL+ RIKLN A++H+ +D A+ +GR +LEQRR A RL+R G SVF GLP+ VD +IL FM MD D++D R RFF +R+F+ + +RG+ SSSVY + S A+ L+WFA +L RP ESV+LPL+V ER+++ Sbjct: 16 ITTLDNIDFNVNDVAEPKTHTKMTFRCPVTIDSVFSAPTPAQVQMFYESRTGSSGKPFGDLPEDEILAWTESFHDNKTLMGFIVYSQLFPKLLQTRIKLNAATYHWGHLDPASEKGRTKLEQRRSADDRLKRNGFTPSVFRGLPHRVDTCANILAFMKMDVDEEDERLRFFNRREFSILVAERGQVGSSSVYSSCSMALSLLWFATTVLARPCCLESVILPLSVAERKMM 245
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: A0A6H5J9C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C0_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.410e-54 Identity = 111/230 (48.26%), Postives = 154/230 (66.96%), Query Frame = 2 Query: 1700 QITTLEKPNFNANEVERA-TKKNTSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDK--SKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERR 2380 ++TTL+ P F+A++V A + SF+CPV+ +F P DQV FY +RN P+ L + E+ W ES DN TL+GF VY+ LFP LL NRIKLN A++H+ +D ++ +GR +LEQRR A++RL+RVG A S+F GLP+ +D SIL FMNM +++D R RFF R+F+ I +RGE SSSVY + S A+ L+WFA +L RP ES++LP+NV ERR Sbjct: 23 RVTTLDNPAFDADDVAAAKSHAKMSFRCPVTIDSVFAPPAPDQVCTFYESRNHGSKPWGHLSEPEQREWAESCHDNKTLMGFIVYATLFPKLLRNRIKLNAATYHWAHLDSSSAKGRLKLEQRRGAVSRLRRVGFARSLFRGLPHRIDPVADTSILVFMNMSVEEEDERFRFFTNREFSMIYSERGEVGSSSVYSSCSTALSLLWFATTVLARPCCLESIILPINVRERR 252
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.930e-53 Identity = 115/229 (50.22%), Postives = 155/229 (67.69%), Query Frame = 2 Query: 1703 ITTLEKPNFNANEVERATKKN-TSFKCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 +TTL + FN ++V + + ++K PV+ K +F PT+ QV+ FY +RN SG P++RL AEKL W ESL DN L+G+ VYSQL P ENR+KL S H+ +++ +T R L QRR A RL+R GS S F+GLPYSVD +K++L +MN+DF+ D R RFFL R+FA S + G+ N+SSVY + S A+ LM+F VVILGRP ESV+LPL+V ER VL Sbjct: 552 LTTLLRAGFNPSDVATLSPRTKVTYKSPVTLKNVFDRPTESQVKIFYHSRNHSGVPFNRLSDAEKLIWTESLHDNSCLMGYLVYSQLLPCASENRVKLKSGSAHWNELNVSTDRAR--LGQRRAAYDRLRRNGSTFSAFYGLPYSVDMTKNVLAYMNIDFEQSDLRHRFFLGREFAMTSSEHGKINASSVYTSCSKALSLMYFTVVILGRPCCLESVILPLSVTERSVL 778
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Match: A0A6H5K1E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E4_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.920e-52 Identity = 103/204 (50.49%), Postives = 141/204 (69.12%), Query Frame = 2 Query: 1775 KCPVSPKKIFLAPTDDQVRQFYGARNFSGTPYDRLPQAEKLAWQESLRDNLTLIGFHVYSQLFPSLLENRIKLNKASHHYRDIDRATPEGRKQLEQRREALTRLQRVGSANSVFHGLPYSVDKSKSILQFMNMDFDDDDSRQRFFLQRDFAAISGKRGETNSSSVYGTSSAAIGLMWFAVVILGRPTAFESVVLPLNVVERRVL 2386 +CPV+ +F APT QV+ FY + + G P+D LP+ E+LAW ES D TL+GF VY+QL P LL+NRIKLN A++H+ +D + +G +LEQRR A+ RL+R GS SVF LPY VD S +IL FM +D +++D R RFF +R+F+ I KRG+ +SSSVY + S A+ L+WFA L RP ES++LPL+V ERR + Sbjct: 9 RCPVTIDNVFSAPTPTQVKVFYESSSSKGKPFDHLPKGEELAWTESFHDK-TLMGFIVYAQLLPKLLQNRIKLNAATYHWAHLDNSKEKGSTKLEQRRRAVDRLKRNGSTRSVFMRLPYRVDTSANILAFMKLDVEEEDERFRFFTKREFSMIFSKRGQVSSSSVYASCSMALSLLWFATAALARPCCLESIILPLSVTERRAM 211 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17740.1 >prot_E-siliculosus-1a_M_contig99.17740.1 ID=prot_E-siliculosus-1a_M_contig99.17740.1|Name=mRNA_E-siliculosus-1a_M_contig99.17740.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=250bp MAPVSTAPKRIRVSSISKVKKQITTLEKPNFNANEVERATKKNTSFKCPVback to top mRNA from alignment at E-siliculosus-1a_M_contig99:7888..10273+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17740.1 ID=mRNA_E-siliculosus-1a_M_contig99.17740.1|Name=mRNA_E-siliculosus-1a_M_contig99.17740.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2386bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:7888..10273+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:7888..10273+ >mRNA_E-siliculosus-1a_M_contig99.17740.1 ID=mRNA_E-siliculosus-1a_M_contig99.17740.1|Name=mRNA_E-siliculosus-1a_M_contig99.17740.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:7888..10273+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |