mRNA_E-siliculosus-1a_M_contig98.17736.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: D1J7C0_ECTSI (Acetolactate synthase small subunit n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C0_ECTSI) HSP 1 Score: 162 bits (410), Expect = 6.390e-49 Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPLIEREL+LIKLKVNLIERTEILNLAQIFRF+ITDVT+STLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE Sbjct: 78 DITYLPLIERELVLIKLKVNLIERTEILNLAQIFRFKITDVTDSTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A1I9LVF0_9PHAE (Acetolactate synthase small subunit n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF0_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.000e-40 Identity = 75/93 (80.65%), Postives = 88/93 (94.62%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL+EREL+LIKL+V+LIER EI NLAQIFRF+ITD+T+ST+ILEVTAD GKIAAL+K+LEKYNIL+L R+GRIALIRES VSTSSLKE Sbjct: 78 DITYLPLVERELVLIKLQVSLIERAEISNLAQIFRFKITDITDSTIILEVTADQGKIAALQKILEKYNILELSRSGRIALIRESGVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A8F0F7F2_9PHAE (Acetolactate synthase small subunit n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7F2_9PHAE) HSP 1 Score: 140 bits (352), Expect = 4.780e-40 Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL++RELILIKL+V++ ER EILNLAQ+FRF+ITD+TESTLILE+TADPGKI AL+K+LEKYNILQL RTG IAL RES VSTSSLKE Sbjct: 78 DITYLPLVQRELILIKLQVSVTEREEILNLAQVFRFKITDITESTLILELTADPGKIVALQKILEKYNILQLSRTGEIALTRESSVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A6B7EYZ6_9PHAE (Acetolactate synthase small subunit n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYZ6_9PHAE) HSP 1 Score: 139 bits (351), Expect = 5.710e-40 Identity = 74/93 (79.57%), Postives = 88/93 (94.62%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPLIEREL+L+KL+V+L+ERTEILNLAQIFRF+ITDVT+ST+ILE+TAD GK+AALEK+LEKY IL+L RTG IALIRESRVS+ SLKE Sbjct: 78 DITYLPLIERELLLVKLQVSLLERTEILNLAQIFRFKITDVTDSTIILEITADQGKVAALEKLLEKYKILELCRTGGIALIRESRVSSLSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A516IDP2_9PHAE (Acetolactate synthase small subunit n=2 Tax=Lessonia TaxID=105411 RepID=A0A516IDP2_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.820e-39 Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL++REL+LIKL+VN+IER EIL LA IFRF+I D+TESTLI+EVTADPGKI AL+K+LEKYNILQL RTG IAL RES VSTSSLKE Sbjct: 78 DITYLPLVQRELVLIKLQVNIIEREEILRLADIFRFKINDITESTLIIEVTADPGKIVALQKILEKYNILQLSRTGEIALTRESSVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A0S0G9Z6_COSCS (Acetolactate synthase small subunit n=19 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9Z6_COSCS) HSP 1 Score: 138 bits (347), Expect = 2.730e-39 Identity = 71/93 (76.34%), Postives = 87/93 (93.55%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL++RELILIKL+V++IER EI+NLA++FRF+ITD+TESTLILE+TADPGKI AL+K+L+KYNILQL RTG IAL RES V+TSSLKE Sbjct: 78 DITYLPLVQRELILIKLQVSVIEREEIINLAEVFRFKITDITESTLILEITADPGKIVALQKILKKYNILQLSRTGEIALTRESSVNTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A0R6LUP2_UNDPI (Acetolactate synthase small subunit n=5 Tax=Alariaceae TaxID=2887 RepID=A0A0R6LUP2_UNDPI) HSP 1 Score: 136 bits (343), Expect = 1.100e-38 Identity = 70/93 (75.27%), Postives = 86/93 (92.47%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL++REL+LIKL++++ ER EILNLA++FRF+ITD+TESTLILE+TADPGKI AL+K+LEKYNILQL RTG IA+ RES VSTSSLKE Sbjct: 78 DITYLPLVQRELVLIKLQISVTEREEILNLAKVFRFKITDITESTLILELTADPGKIVALQKILEKYNILQLSRTGEIAVTRESSVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A8F0F9Y8_9PHAE (Acetolactate synthase small subunit n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Y8_9PHAE) HSP 1 Score: 134 bits (338), Expect = 5.950e-38 Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL+ERELILIKL+VN+ ER EILNLAQ+FRF+I D+TESTLILE+TADPGKIAAL KVL+KYNILQL R+G IAL RES V+T SL+E Sbjct: 78 DITYLPLVERELILIKLQVNVTEREEILNLAQVFRFKINDITESTLILEITADPGKIAALHKVLKKYNILQLSRSGGIALTRESSVNTFSLRE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A344PFD2_9PHAE (Acetolactate synthase small subunit n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFD2_9PHAE) HSP 1 Score: 134 bits (337), Expect = 7.540e-38 Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +ITYLPL++REL+L+KL+VNL ER EI LAQIFRF+ITD+T+ST+ILEVTAD GKIAALEK+LEKYNILQL RTG IALIRES VST SLKE Sbjct: 78 DITYLPLVQRELVLVKLQVNLKERAEISTLAQIFRFKITDMTDSTIILEVTADQGKIAALEKILEKYNILQLSRTGGIALIRESGVSTLSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A8F0JXD3_9PHAE (Acetolactate synthase small subunit n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXD3_9PHAE) HSP 1 Score: 134 bits (337), Expect = 7.970e-38 Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1 Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285 +IT LPL++REL+LIKL+VNLIERTEILNLAQ+FRF++ D+T+STLILE+TADPGKI AL +VL+KYNILQL RTG IAL RES V+TSSLKE Sbjct: 78 DITCLPLVQRELLLIKLQVNLIERTEILNLAQVFRFKVIDMTDSTLILEITADPGKIVALYQVLDKYNILQLSRTGEIALTRESSVNTSSLKE 170 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17736.1 >prot_E-siliculosus-1a_M_contig98.17736.1 ID=prot_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=95bp IVNITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILback to top mRNA from alignment at E-siliculosus-1a_M_contig98:651865..652149+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17736.1 ID=mRNA_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=285bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:651865..652149+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:651865..652149+ >mRNA_E-siliculosus-1a_M_contig98.17736.1 ID=mRNA_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:651865..652149+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |