mRNA_E-siliculosus-1a_M_contig98.17735.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: D1J7B8_ECTSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J7B8_ECTSI) HSP 1 Score: 224 bits (572), Expect = 4.270e-66 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN 386 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN Sbjct: 776 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN 903
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A2I4Q2E7_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E7_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.910e-32 Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDE---------DPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEK 314 I+LSLTPRM+ELL+EEGFNP YGARPLRRALVKLVEDKVSLEYLRY+N++D+E + VDILVDV+ N+VKVSI+KT+ KE+ + ++ E++ YKI+VP +K Sbjct: 773 ISLSLTPRMLELLIEEGFNPIYGARPLRRALVKLVEDKVSLEYLRYQNDHDEESTQKDQQENEAVDILVDVEFNRVKVSITKTLKKEQSEKPKDETPPQERKKYKIVVPSRQK 885
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A8F0F755_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F755_9PHAE) HSP 1 Score: 125 bits (315), Expect = 8.710e-31 Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNEND----DEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVP 302 ITLSLTPRMMELL++EGFNP YGARPLRRALVKLVEDKVS+EYLRYKN++D +ED VDILVDVDLNKVKVSI KT K E XXXXX +KI++P Sbjct: 771 ITLSLTPRMMELLIDEGFNPIYGARPLRRALVKLVEDKVSIEYLRYKNDHDGEDEEEDAVDILVDVDLNKVKVSIKKTEKKPEEXXXXXXXXXXXXXKFKIVLP 874
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A8E6D4W2_9PHAE (Clp protease ATP binding subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4W2_9PHAE) HSP 1 Score: 116 bits (290), Expect = 2.030e-27 Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDP---VDILVDVD-LNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKI 317 I+LSLT RMME+L+EEGFNPTYGARPLRRALVKLVEDKVSLEYLR+ + D+ED V+ILVDV+ L+KV+VSI + II+E+ Q+ E++ YK+++P+ ++ Sbjct: 772 ISLSLTTRMMEVLIEEGFNPTYGARPLRRALVKLVEDKVSLEYLRFTKDKDNEDQNPAVEILVDVNSLDKVEVSIKEQIIEEKKVEEQKPPVVKERKKYKVVLPKYRRL 880
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A0R6M4R6_UNDPI (ATP-dependent clp protease ATP-binding subunit n=63 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4R6_UNDPI) HSP 1 Score: 97.8 bits (242), Expect = 5.880e-21 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDD 158 I+LSLTPRMMELL+EEGFNPTYGARPLRRA+VKLVEDKVSLEYLRYK ++DD Sbjct: 771 ISLSLTPRMMELLIEEGFNPTYGARPLRRAIVKLVEDKVSLEYLRYKKDHDD 822
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A2T1CER0_9CYAN (ATP-dependent Clp protease ATP-binding subunit ClpC n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1CER0_9CYAN) HSP 1 Score: 66.2 bits (160), Expect = 6.230e-10 Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKT 224 ITL +TP+ ME LVEEG+NP+YGARPLRRA+++L+ED ++ E L + ++ D VDI D +V++ + +T Sbjct: 745 ITLEVTPKFMERLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILSGRVKHGDTALVDINED---GQVQIRVEQT 815
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A7S2LSI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSI6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 6.470e-10 Identity = 26/44 (59.09%), Postives = 39/44 (88.64%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 134 ITL +TPR+ +++VEEGF+P YGARPLRRA+++L+ED ++ E+L Sbjct: 86 ITLEITPRVKQIIVEEGFDPIYGARPLRRAVMRLLEDNLAKEFL 129
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: I4IGR8_9CHRO (ClpB_D2-small domain-containing protein n=1 Tax=Microcystis sp. T1-4 TaxID=1160279 RepID=I4IGR8_9CHRO) HSP 1 Score: 60.5 bits (145), Expect = 2.140e-9 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDI 176 ITLS+T + E L+EEG+NP YGARPLRRA+++L+ED ++ E L + + D VDI Sbjct: 10 ITLSVTDKFKERLIEEGYNPAYGARPLRRAIMRLLEDVLAEEILSGRVSDGDTAMVDI 67
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit ClpA homolog n=1 Tax=Cyanidium caldarium TaxID=2771 RepID=CLPC_CYACA) HSP 1 Score: 64.7 bits (156), Expect = 2.150e-9 Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNK 200 I+L +T R LL+EEG+NP+YGARPLRRALV+L+ED ++ E L K + D + ++DVD NK Sbjct: 776 ISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKEGD----NAMIDVDENK 837
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A7S6ZPD9_9STRA (ClpC n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPD9_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.010e-9 Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 134 ++L++T RM L++EGFNP YGARPLRRA+V+L+EDKV+ +YL Sbjct: 775 LSLAVTTRMRARLIDEGFNPVYGARPLRRAVVRLIEDKVAAKYL 818 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17735.1 >prot_E-siliculosus-1a_M_contig98.17735.1 ID=prot_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=121bp MMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDIback to top mRNA from alignment at E-siliculosus-1a_M_contig98:650691..651115+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17735.1 ID=mRNA_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=425bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:650691..651115+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:650691..651115+ >mRNA_E-siliculosus-1a_M_contig98.17735.1 ID=mRNA_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:650691..651115+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |