mRNA_E-siliculosus-1a_M_contig98.17734.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 323 bits (829), Expect = 8.480e-108 Identity = 154/199 (77.39%), Postives = 170/199 (85.43%), Query Frame = 2 Query: 281 AARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSRRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVFLRRARYTCVNRAKLGEFWSVWCTQEMS*RNGTRLVFCP 877 AARTPRHAKG R APEP+ HL+RRWLDRYCTS EA+D LGA+DITGCVLDMC GPTDAVA RLRSTCE+LT+D+SS RPADTNL+ASLESFPE+F+AA SGK P+WV TSPPY+ AL FVKAAMSL TKGV K+ + FLEPCAD GGWLQTNPPS+CVFLRRA+YT N AK EFW VW TQEMS RN TRLVFCP Sbjct: 2 AARTPRHAKGQRTAPEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNRTRLVFCP 200
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 286 bits (731), Expect = 1.770e-91 Identity = 146/238 (61.34%), Postives = 172/238 (72.27%), Query Frame = 2 Query: 170 GAITLAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSRRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVFLRRARYTCVNRAKLGEFWSVWCTQE--MS*RNGTRLVFCP 877 G LA CKR CLL+LY+K E +S++R ARKA + PRH++ W APEP H KRR LDRYCT EAV+ L A+ I GCVLDMC GP DAVA RSTCEVLT+D+SSR A TNL+ASL SF + F A+ GK PDWVVTSPPY A+ FVKAA+++ TKGVA+KLPLSFLEPCADRGGWL NPP+VC+FLRRA+YT + K+GEFW VW T G+RLVFCP Sbjct: 68 GTNLLALCKRAGCLLELYQKQEWA----RSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFCP 301
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 265 bits (676), Expect = 3.070e-84 Identity = 132/180 (73.33%), Postives = 147/180 (81.67%), Query Frame = 2 Query: 152 LGRGGLGAITLAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSRRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLP 691 L GGLGA TL CKR CLLQLYKKHEQ +S ++SKDRRARKAA+TPRHA G PEP+ HLKRRWLDRYCTS EAV+ LLGA+ ITGC+LD+C GPTDAVA RL TCEVLT+D+SS RPADTNL+ASLESFP++F AASSGK PDWVVTSP Y AL FVKAAMSL T+GV V P Sbjct: 25 LDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 246 bits (629), Expect = 2.690e-78 Identity = 117/148 (79.05%), Postives = 127/148 (85.81%), Query Frame = 2 Query: 434 MCSGPTDAVAARLRSTCEVLTDDLSSRRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVFLRRARYTCVNRAKLGEFWSVWCTQEMS*RNGTRLVFCP 877 MC GPTDAVA RLRSTCE+LT+D+SS RPADTNL ASLE FPE+F+AA SGK P+WVVTSPPY+ AL FVKAAMSL TKGVA K+P+ FLEPCADRGGWLQTNPPSVCVFLRRA+YT N AK GEFW VW QEMS RN TRLVFCP Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFCP 148
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 241 bits (616), Expect = 3.430e-75 Identity = 120/215 (55.81%), Postives = 153/215 (71.16%), Query Frame = 2 Query: 182 LAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSRRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVFLRRARYTCVNRAKLGEFWSVW 826 L CKR CLL+L+ ++Q S +K R+A R P+ W CAPEP + LKRR +DRYCTS ++ LLG + I+GCVLDMC G DAVA RLR TC+VLT+D+ R TNL+AS SF ++F+AA G+ PDW+VTSPPY ALAFVKAA+++ KGVA+KLPLSFLEPCADR GWLQ NPP++C+ + RARY + ++GEFW VW Sbjct: 18 LVLCKRAGCLLELFVLNQQRDSRAPTK----RRAKRGPK----WTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAH-VRVGEFWGVW 223
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 239 bits (609), Expect = 3.090e-74 Identity = 121/209 (57.89%), Postives = 149/209 (71.29%), Query Frame = 2 Query: 152 LGRGGLGAITLAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSRR-----PADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVF 763 L G G L C RP CLLQLY K +E + ++K R A + RH W PEP +H+KRR LDRYCTS EAV+ LLGA+++ GCVLDMC GP DA+A RL +TC+V+T+D+S+R P DTNL+ASL SF +F+ A G+ PDWV+TSPPY AL +VK+A+SL KGVA+KLPLSFLEPCADRGGWLQ NPP+VCVF Sbjct: 16 LNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLR----AQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVF 220
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 222 bits (565), Expect = 1.350e-66 Identity = 122/244 (50.00%), Postives = 157/244 (64.34%), Query Frame = 2 Query: 164 GLGAITLAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSR------RPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVFLRRARYTCVNRAKLGEFWSVW-CTQ-EMS*RNGTRLVF 871 G+G +L CKR C+L+ KH + D+++ +K R A W APEP H+KRR LDRYCTS AV+ LL A++++G VLDMC GP DAVA +LR TCEV+T+D+SSR R DT+L+AS +F EF+A + P+ VV SPPY A+ FVKAA+ + GVA+K LSFLEPC DR WL+ NPP+VCVFLRRA YT +GEFW VW CT + + GT+LVF Sbjct: 56 GVGIDSLVRCKRAECVLKQNDKHMSDFCHDRAR----KKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYT-PEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.940e-61 Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 2 Query: 512 RRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPPYNDALAFVKAAMSLGTKGVAVKLPLSFLEPCADRGGWLQTNPPSVCVFLRRARYTCVNRAKLGEFWSVWCTQEMS*RNGTRLVFCP 877 RRPADTNL+ASLESFPE+F+AA SGK P+WVVTSPPY+ AL FVKAAMSL TKGV K+P+S LEPCADRGGWLQTNPPSVC+FLRRA+YT N AK+GEFW VW TQE+S RN TRLVFCP Sbjct: 134 RRPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVFCP 255
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5K8H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H6_9PHAE) HSP 1 Score: 206 bits (525), Expect = 3.310e-61 Identity = 116/227 (51.10%), Postives = 129/227 (56.83%), Query Frame = 2 Query: 152 LGRGGLGAITLAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKG-----------------WRCA------------------------------------------------------PEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSSRRPADTNLEASLESFPEEFVAASSGKMPDWVVTSPP 619 L GGLG T+ C+R CLLQLYKKH Q +S +QSKDRRARKAA+TPRHA G W C PEP+ HLKRRWLDRYCTS EAV+ LLGA+ ITGC+LDMC GPTDAVA RLR TCEV T D+SS RPADTNL+ASLES P++FVAA SGK PDWVVTSPP Sbjct: 25 LDEGGLGESTVTLCRRSGCLLQLYKKHNQRMSKEQSKDRRARKAAQTPRHATGMWTLPEPQTHLKRRWLDWYCTSPEAVDALLGAVSITGCNLDMCGGPTDAVATRLRPTCEVFTNDTPRHATGMWTLPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDMCGGPTDAVATRLRPTCEVFTKDVSSGRPADTNLDASLESLPDDFVAACSGKRPDWVVTSPP 251
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Match: A0A6H5KNW7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW7_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.170e-58 Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 2 Query: 146 SCLGRGGLGAITLAPCKRPACLLQLYKKHEQEVSVDQSKDRRARKAARTPRHAKGWRCAPEPERHLKRRWLDRYCTSTEAVDTLLGAMDITGCVLDMCSGPTDAVAARLRSTCEVLTDDLSS 511 + L G LG ITL C+RPACLLQLYKKHEQ S D+SKDRRARKAARTPRHAKGW APEP+ HLKRRWLDRYCTS EAVD LLGA+ ITGCVLDMC GPTDAVA RLRSTCEVLT+D SS Sbjct: 50 TALNEGNLGVITLVLCRRPACLLQLYKKHEQRASKDRSKDRRARKAARTPRHAKGWVGAPEPQTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRSTCEVLTNDASS 171 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17734.1 >prot_E-siliculosus-1a_M_contig98.17734.1 ID=prot_E-siliculosus-1a_M_contig98.17734.1|Name=mRNA_E-siliculosus-1a_M_contig98.17734.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=269bp MPPRRVDFCLATHEAYVGPPTKSGISWTRPASQTSSCLGRGGLGAITLAPback to top mRNA from alignment at E-siliculosus-1a_M_contig98:643588..645250+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17734.1 ID=mRNA_E-siliculosus-1a_M_contig98.17734.1|Name=mRNA_E-siliculosus-1a_M_contig98.17734.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1663bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:643588..645250+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:643588..645250+ >mRNA_E-siliculosus-1a_M_contig98.17734.1 ID=mRNA_E-siliculosus-1a_M_contig98.17734.1|Name=mRNA_E-siliculosus-1a_M_contig98.17734.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1614bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:643588..645250+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |