mRNA_E-siliculosus-1a_M_contig98.17732.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.440e-26 Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3 Query: 3 GGQRRAFRLRGSPDEGGSCT-VIRDLR*RASRCRGGSVGICRCSRRAFQGGEQQQGFF 173
GGQRR FRL GSPDEGGSCT VI DLR RASRCRGGSVGICRCSRRA+QGGEQ QGFF
Sbjct: 3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFF 60
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 6.180e-22 Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 3 Query: 3 GGQRRAFRLRGSPDEGGSCTVIRDLR*RASRCRGGSVGICRCSRRAFQGGEQQQGFFAGGW 185
GG + F L GS DEGGSC+VI DLR RASRCRGGSV ICRCSRRA+QGGEQQQG GW
Sbjct: 5 GGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGW 65
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.610e-14 Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1 Query: 43 MKGGAAQ-SSEISANALPDVGGAAWAFVVVVGALSRVASSSRGFLPVG 183
MKGGAAQ SS+ISANALPDVGGAAWAFVVVVGAL+RV SSSR FL G
Sbjct: 1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGG 48 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17732.1 >prot_E-siliculosus-1a_M_contig98.17732.1 ID=prot_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=75bp RGASAGLFGCAVLQMKGGAAQSSEISANALPDVGGAAWAFVVVVGALSRVback to top mRNA from alignment at E-siliculosus-1a_M_contig98:636689..636915- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17732.1 ID=mRNA_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=227bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:636689..636915- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:636689..636915- >mRNA_E-siliculosus-1a_M_contig98.17732.1 ID=mRNA_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:636689..636915- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |