mRNA_E-siliculosus-1a_M_contig98.17716.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: D7G0X3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0X3_ECTSI) HSP 1 Score: 179 bits (454), Expect = 1.300e-48 Identity = 95/113 (84.07%), Postives = 98/113 (86.73%), Query Frame = 1 Query: 259 HQPLPD-LFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMFDEKAVQK 594
+ P D L + KVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEI R LGD L+D EI LLINAA KDRD TISMKEFVTFMFDEKAVQK
Sbjct: 52 YSPTKDQLKKLMDKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIARALGDSLTDAEIYLLINAAHKDRDATISMKEFVTFMFDEKAVQK 164
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: D8LJU6_ECTSI (Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU6_ECTSI) HSP 1 Score: 114 bits (286), Expect = 6.160e-26 Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMF 573
G + +Q L ++ KVD D +G ISF+EFV +M++G +ETD+ KEIN AF FFDK+GDG+V ELAEIMRGLGDKLSD+EI+LL+ A IS+ EF++FM+
Sbjct: 47 GYSPTNQQLKEMMA---KVDTDQSGGISFDEFVAMMQLGEVETDFTKEINEAFKFFDKDGDGEVTPAELAEIMRGLGDKLSDDEIELLVKVAXXXXXXVISIDEFISFMY 153
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A6H5JMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF0_9PHAE) HSP 1 Score: 108 bits (270), Expect = 4.010e-23 Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 1 Query: 286 VFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKE 555
+ KVD DG G ISFEEFV +M++G +ETD++KEIN AF FFDK+GDG+V R ELAEIMRGLGD L+D+EIDLL+ IS+ E
Sbjct: 121 IMAKVDTDGNGGISFEEFVAMMQLGEVETDFKKEINEAFKFFDKDGDGEVTRAELAEIMRGLGDTLTDDEIDLLVKVXXXXXXXVISIDE 210
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: D8LH46_ECTSI (Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH46_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.820e-20 Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMF 573
G + ++ L D+ KVDLDG G I+F EFV +MR ++TD++++I AF FFD++G G +D +EL IMR LG KL+D EI+LL+ AD D DG + + EF+ M+
Sbjct: 48 GYSPTNKQLEDMMA---KVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINEFLKIMY 154
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A835YUT0_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT0_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.980e-18 Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLI 510
G N + L D+ + KVD+DG G ISF+EFV++MR +ETD+++EI AF FDK+G G +D++EL IM+GLG LSD+EI+LL+
Sbjct: 48 GYNPTDEQLHDMML---KVDIDGNGSISFDEFVIMMRKCEVETDFDREITEAFKVFDKDGSGSIDKEELTAIMKGLGANLSDQEIELLV 133
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A6H5JMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU5_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 6.870e-18 Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 280 FVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTF 567
+ V VDLDG G I+F EFV +MR ++TD++++I AF FFD++G G +D +EL IMR LG KL+D EI+LL+ AD D DG + + E F
Sbjct: 30 WAVLLLVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINEASDF 125
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A6P4Z6I9_BRABE (Calmodulin n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z6I9_BRABE) HSP 1 Score: 86.3 bits (212), Expect = 4.910e-16 Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 259 HQP-LPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMF 573
H+P L +L + ++ G+G I F EF+++M E+D EKEI AF FDK+G+G + EL +M LG+KL+DEE+D +I+ AD D DG I+ +EF T M+
Sbjct: 42 HKPELAELQDMINEMXXXGSGTIDFPEFLLVMSKKQQESDSEKEIREAFRVFDKDGNGFITASELRVVMANLGEKLTDEEVDEMIDEADSDGDGHINFEEFYTTMY 147
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A0D2F6B1_9EURO (Uncharacterized protein n=5 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2F6B1_9EURO) HSP 1 Score: 87.0 bits (214), Expect = 5.190e-16 Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFM 570
G N L D+ +VD+D +G I FEEF+ +M D+ E AF+ FDK+G G + EL ++M+ LG+ L+DEEID +I ADKD++GTI +EFV +
Sbjct: 67 GQNPSDSELQDMI---NEVDVDRSGSIDFEEFLKMMSTTVKAQDFAHETRAAFNVFDKDGSGTISADELRQVMKSLGENLTDEEIDEMIREADKDKNGTIDYEEFVQLL 172
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A072P174_9EURO (Calmodulin n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072P174_9EURO) HSP 1 Score: 85.9 bits (211), Expect = 8.930e-16 Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1 Query: 244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFM 570
G N L D+ +VD+D G I F+EF+ +M TD+ E AF+ FDK+G G + EL ++M+ LG+ L+DEEID +I ADKDR+GTI F F+
Sbjct: 5 GQNPSESELQDMI---NEVDVDSNGSIDFDEFLKMMSQTVKATDFAHETRAAFNVFDKDGSGTISADELRQVMKSLGENLTDEEIDEMIREADKDRNGTIDCMWFYAFV 110
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A445FL35_GLYSO (Calmodulin-like protein 8 isoform B n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FL35_GLYSO) HSP 1 Score: 84.7 bits (208), Expect = 9.590e-16 Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 274 DLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFM 570
+L ++ +VD+DG G I F EF+ LM ET+ E+E+ AF FDK+ DG + EL +MR +G+K++DEE++ ++ AD D DG I +EFV M
Sbjct: 28 ELQIMMNEVDMDGNGTIEFGEFLNLMARKMKETEAEEELKEAFRVFDKDHDGYISPSELRSVMRTIGEKVTDEEVEQMVKEADLDGDGLIDYEEFVRMM 126 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17716.1 >prot_E-siliculosus-1a_M_contig98.17716.1 ID=prot_E-siliculosus-1a_M_contig98.17716.1|Name=mRNA_E-siliculosus-1a_M_contig98.17716.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=168bp MFSPLVFVHAGRIHVPRASGFVFFRSRWIWTAQNCSFNFWLLVFLFSCVQback to top mRNA from alignment at E-siliculosus-1a_M_contig98:368615..373256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17716.1 ID=mRNA_E-siliculosus-1a_M_contig98.17716.1|Name=mRNA_E-siliculosus-1a_M_contig98.17716.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:368615..373256+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:368615..373256+ >mRNA_E-siliculosus-1a_M_contig98.17716.1 ID=mRNA_E-siliculosus-1a_M_contig98.17716.1|Name=mRNA_E-siliculosus-1a_M_contig98.17716.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:368615..373256+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |