mRNA_E-siliculosus-1a_M_contig98.17713.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI) HSP 1 Score: 733 bits (1893), Expect = 7.500e-244 Identity = 633/883 (71.69%), Postives = 639/883 (72.37%), Query Frame = 3 Query: 1464 KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXXXXXXXRSARSPEPDFDAASXXXXXXXXKAIGSGGPDGDRVADRLGGGGYWGGXXXXXPQGHRGSXXXXXXXXXXXXPGDMYAGXXXXXXXXDAILGWGRQEGSNNPGPMGVLGGIGGDQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYSHPLGIPXXXXXXXXXXXXXXXXXXXXXXXGLRPLARDSHFPGHGVSYRDQLQQXXXXXXXXXHHLYAPNPYGFLPHMSSGSQGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGGXXXXXXGMDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXXXXXXXXVQXXXXXXXXXXWPSEAAVPLSHVDYPHQEAADMGMGRDDGRRGGDPADRGLDVEGSGGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGRDSSPGPFHSMGADVGGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDALNGGGAAGRPMSPLMSTLGGESGETPPGLARLRTTGGMSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVPCPPRHNPERSSPSFDALSGTPAAGEVDGPSGSGSGSAAHEXXXXXXMNSRGSGSIGGRQPPQXXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRDAPGGEAEEARKRLRLGELN 4112
KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXX RSARSPEPDFDAAS XXXXX KAIGSGGPDGDRVADRLGGG YWGG XX PQGHRGSXXXXXXXXX PGDMYAGXXXXXXX DAILGWGRQEG NNPGPMGVLGGIGGDQRQ +Y+ + DQ QGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDG XXXX MDVGRQGGSLSPFIGHQSS++SSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXX VQ XXXXXXXXXWPSEAAVPLSHVDYPHQEA DMGMGRDDGRRGGDPAD GLDVEG GGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGR SSPGPFHSMGADVGG ASXXXXXXXXXXXXXXXXXXXXXXXXXX E DALN GR MSPLMSTLGGESGETPPGLARLRTTGGMS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVP PPRHNPERSSPSFDALSGTPAAGEVDGPSGS XXXXXX SIGGRQPPQ XXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDR+A GGE EEARKRLRLGELN
Sbjct: 231 KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXXS----RSARSPEPDFDAASGVXXXXX-KAIGSGGPDGDRVADRLGGG-YWGGGAXXGPQGHRGSXXXXXXXXXDQDPGDMYAGXXXXXXX-DAILGWGRQEGGNNPGPMGVLGGIGGDQRQQ---------------------------------------------------------------------------------QYA-------------------------------------------SSAVDDQ-------------------------------QGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGXXXXX---MDVGRQGGSLSPFIGHQSSSASSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXVG-----VQGXXXXXXXXXWPSEAAVPLSHVDYPHQEAGDMGMGRDDGRRGGDPADGGLDVEGGGGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGRGSSPGPFHSMGADVGG-ASXXXXXXXXXXXXXXXXXXXXXXXXXXAMHSSSSGAGGEIDALNXXXXXGRSMSPLMSTLGGESGETPPGLARLRTTGGMSXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVPSPPRHNPERSSPSFDALSGTPAAGEVDGPSGS------XXXXXXXXXXXXXXXSIGGRQPPQQXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRNAAGGEGEEARKRLRLGELN 925
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Match: A0A6H5KHX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX5_9PHAE) HSP 1 Score: 679 bits (1752), Expect = 7.020e-219 Identity = 976/1301 (75.02%), Postives = 998/1301 (76.71%), Query Frame = 3 Query: 393 MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLMKRRSQCVVSXXXXXXXXXXXXXXXXXXXXXXXXXXVYLKNXKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNCRCKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXXXXXXX--RSARSP-----------------------EPDFDAASXXXXXXXXKAIGSGGPDGDRVADRLGGGGYWGGXXXXXPQGHRGSXXXXXXXXXXXXPGDMYAGXXXXXXXXDAILGWGRQEGS-------NNPGPMGVLGGIGGDQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYSHPLGIPXXXXXXXXXXXXXXXXXXXXXXXGLRPLARDSHFPGHGVSYRDQLQQXXXXXXXXXHHLYAPNPYGFLPHMSSGSQGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGGXXXXXXGMDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXXXXXXXX------------------------VQXXXXXXXXXXWPSEAAVPLSHVDYPHQEAADMGMGRDDGRRGGDPADRGLDVEGSGGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGRDSSPGPFHSMGADVGGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDALNGGGAAGRPMSPLMSTLGGESGETPPGLARLRTTGGMSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVPCPPRHNPERSSPSFDALSGTPAAGEVDGPSGSGSGSAAHEXXXXXX-----MNSRGSGSIGGRQPPQXXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRDAPGGEAEEARKRLRLGELN 4112
MDNTGGGEPDTSDTIDVLKCLRCG EGCTNVPGLGYQGEGPTMCTEHA+PAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLMKRRSQCVVSXXXXXXXXXXXXXXXXXXXXXXXXXXVYLKNXKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNCRCKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPHAPKREGDVSIRLGVSVDAS+LVGNL GG XXXXXXXXXXX R RSP E ++ S + G P G VA+ + G +G GD A+ WG S NNPGPMGVLGGIG DQR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EYSHPLGIP XXXXXXXXXX GLRPLARDSHF YRDQLQQ HLY PNPYGFLPHMSSGSQGGYGPGAIGGDNG + S V+ + G + PHARRP PPSPGRSGGGIPGMPG M+D XXXXXX MDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQ SFQALDWDDPSGS XXXXXXXXXXXXXXXXXXX +Q WPSEAAVPLSHVDYPHQEA DMGMGRDDGRRGG PA+ GLD+EGSGGPXXXXXXXFGTRLPGVDLGQGM+PHFDRMHGIGGGRDSSPGPFHS+GA+VG + XXXXXXXXXXXXXXXXXXXXX X ETDALN AAGRPMSPLMSTLGGESGETPPGLARLRT GGMSSEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STGLGNALQHDVP P +HNPERSSPSFDALSGTPAAGEVDGPSGS XXXXXX MNSRGSGSIGGRQPPQXXXXXXXXEFAPT XXXXEVSKTSLAPHE GAGGDMVRGEGREDRDA GGEAEEARKRLRLGELN
Sbjct: 1 MDNTGGGEPDTSDTIDVLKCLRCGHEGCTNVPGLGYQGEGPTMCTEHAAPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMKRRSQCVVSXXXXXXXXXXXXXXXXXXXXXXXXXXVYLKNXKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNCRCKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPHAPKREGDVSIRLGVSVDASSLVGNLAGGXXXXXXXXXXXXTAAPADRRGHRSPISRPQAAXXXXXXXXXXXXXVRTETEWQTGSAAATGEEERERG---PRGTEVAEA-----WVEGAEMIRIRGTCMRVAAAAAVAMLSWGGDGKKLVCEIEHVEKAL--WGISGASALLCVCGNNPGPMGVLGGIGEDQRHQQYASSAVDDQQALRMRRLGQDPPQDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPD---EYSHPLGIPPPRSSQHXXXXXXXXXXMTGGGGGLRPLARDSHF------YRDQLQQQQQ-------HLYGPNPYGFLPHMSSGSQGGYGPGAIGGDNGEGL-------SDVVFSCGV----------GGVLFMPHARRPFPPSPGRSGGGIPGMPGGXMMD--XXXXXXXMDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQSSFQALDWDDPSGSGXXXXXXXXXXXXXXXXXXXWWPSLPLEIGDDPWGAASTERRGVGMQGGGSAGGDGGWPSEAAVPLSHVDYPHQEAGDMGMGRDDGRRGGGPAEGGLDMEGSGGPXXXXXXXFGTRLPGVDLGQGMIPHFDRMHGIGGGRDSSPGPFHSIGAEVGAASXXXXXXXXXXXXXXXXXXXXXXGAXG------------ETDALNXXXAAGRPMSPLMSTLGGESGETPPGLARLRT-GGMSSEGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------STGLGNALQHDVPSPSQHNPERSSPSFDALSGTPAAGEVDGPSGSXXXXXXXXXXXXXXXXXXXMNSRGSGSIGGRQPPQXXXXXXXXEFAPTAXXXXEVSKTSLAPHEIGAGGDMVRGEGREDRDAAGGEAEEARKRLRLGELN 1235
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Match: D7G0X1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X1_ECTSI) HSP 1 Score: 131 bits (329), Expect = 3.100e-32 Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 3 Query: 393 MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLMKRRSQ 686
MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLMKRRSQ
Sbjct: 1 MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMKRRSQ 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17713.1 >prot_E-siliculosus-1a_M_contig98.17713.1 ID=prot_E-siliculosus-1a_M_contig98.17713.1|Name=mRNA_E-siliculosus-1a_M_contig98.17713.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1241bp MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPback to top mRNA from alignment at E-siliculosus-1a_M_contig98:315626..327930- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17713.1 ID=mRNA_E-siliculosus-1a_M_contig98.17713.1|Name=mRNA_E-siliculosus-1a_M_contig98.17713.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12305bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:315626..327930- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:315626..327930- >mRNA_E-siliculosus-1a_M_contig98.17713.1 ID=mRNA_E-siliculosus-1a_M_contig98.17713.1|Name=mRNA_E-siliculosus-1a_M_contig98.17713.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7446bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:315626..327930- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |