mRNA_E-siliculosus-1a_M_contig98.17711.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI) HSP 1 Score: 442 bits (1136), Expect = 7.660e-152 Identity = 261/284 (91.90%), Postives = 264/284 (92.96%), Query Frame = 1 Query: 1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXX----ELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCGEI 840 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPF+WDTP A PAPEAG E RRRAFF MSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXX ELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAF+GMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIE+CGEI Sbjct: 1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLAPPAPEAGAEERQQGGSGRRRPRRRAFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA) HSP 1 Score: 216 bits (550), Expect = 2.860e-64 Identity = 121/277 (43.68%), Postives = 159/277 (57.40%), Query Frame = 1 Query: 1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKC 831 MQA R + + G+L+ R R S G GWY ++++ G DAF + R P PF+WD AAP R+RA+ ++++ G G+VEFELASDLLPVT +NFL+LC G T YKG+ IH + G G+MGGDVEG GK+SHS G R+F DE F IPH++ GLLTMANSG+ TNGSQFY+T A H+DGRSVAFGRV G++VVR V+G++S++ KPVS++ I C Sbjct: 1 MQAFRVATVVPGALRHTRM-ARGSRGWGWYLKHKQQGDDAFIRDRPPTPFDWDAAPAAP-------------------RKRAYVEIAIAGENIGKVEFELASDLLPVTCKNFLQLCTGAATGPDGAPLT--------------------------------YKGTPIHTLAKGVGLMGGDVEGGNGKKSHSGL-GKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITDC 224
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.290e-52 Identity = 110/274 (40.15%), Postives = 142/274 (51.82%), Query Frame = 1 Query: 61 TRASTGRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGV-TVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDV---------------EGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCG 834 +R GRGWY+ Y+ GP+ F++ R P PF+W PS A P R + F +S+D P GR+ ELA D+LP+ +ENF LC G G T LGY GS IHRVV G GI+GGD+ + GG +HS G RFFPDE+F IPHT PGLL+M ++G H NGS F+I+T A HLDGRSV FGRV G+EV+ AV Y+IRG+PV+ + +E+ G Sbjct: 32 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPR------------RSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKT-----------------------------GLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.480e-51 Identity = 110/274 (40.15%), Postives = 142/274 (51.82%), Query Frame = 1 Query: 61 TRASTGRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGV-TVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDV---------------EGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCG 834 +R GRGWY+ Y+ GP+ F++ R P PF+W PS A P R + F +S+D P GR+ ELA D+LP+ +ENF LC G G T LGY GS IHRVV G GI+GGD+ + GG +HS G RFFPDE+F IPHT PGLL+M ++G H NGS F+I+T A HLDGRSV FGRV G+EV+ AV Y+IRG+PV+ + +E+ G Sbjct: 147 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSRPSTATTPSEAPR------------RSKVFLGLSLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKT-----------------------------GLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 378
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA) HSP 1 Score: 169 bits (429), Expect = 9.130e-46 Identity = 100/255 (39.22%), Postives = 133/255 (52.16%), Query Frame = 1 Query: 70 STGRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCG 834 S+GRGWY++Y++ G + FRK P PF+W EAG + D+SVDG GRVE EL ++LP+T+ NF +LC G L Y + IH VV + I+ GDVE GK SHSA G R+F DEA ++PHT G+++M N G+ TNGSQFYITT + LDG SVAFGRVT G++VV ++ ++SIRG PVS +T+ G Sbjct: 67 SSGRGWYKKYEKEGEEGFRKYNPPTPFDWS--------EAGATSL-------------VYLDVSVDGADPGRVEIELLDEILPITTTNFKKLCTGENPDG------------------------------------LSYADTPIHHVVKDSAIVAGDVELKTGKGSHSAL-GTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAG 263
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0A7S1UAR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAR4_9STRA) HSP 1 Score: 161 bits (408), Expect = 3.250e-43 Identity = 95/255 (37.25%), Postives = 135/255 (52.94%), Query Frame = 1 Query: 76 GRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCGEI 840 G GWY++Y++ GP+ FRK + P PF+WD+ + R+R FFD++VDG GR+ E D+LPVTSENF +L A A +A L YK S IHR++ + ++ GDVEG G+ SHSA G R+F E F +PH+ PG+++M ++ NGSQFYIT E HLDGR AFGRV +G+++V+ + G +S PVS+I+ + G I Sbjct: 28 GTGWYRKYEKEGPEGFRKYKLPTPFDWDSNDPS-------------------KRKRVFFDVNVDGESKGRIVVETLDDVLPVTSENFQKL------AMAPKDAWLT------------------------------YKNSGIHRIMKTSALVAGDVEGGSGRASHSAL-GRRYFEHEGFYVPHSEPGIVSMVSNKRDENGSQFYITIEPCPHLDGRCTAFGRVVEGMDLVQELRGTFSRHEIPVSDISFGETGVI 226
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN) HSP 1 Score: 151 bits (381), Expect = 3.540e-40 Identity = 90/202 (44.55%), Postives = 114/202 (56.44%), Query Frame = 1 Query: 241 RAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGS-VIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYG-MYSIRGKPVSEITIEKCGEI 840 R FFD++VDG AGR+E EL +LLP T ENF LC + +G GY G+ + RVV G G++GG V+ GG SHSAF G R F DE F +PH PGLL+MAN+G+ TNGSQFY+TT AA H+DGR VAFGRV GL+VV+ + +Y+ RG PV + I CG + Sbjct: 1 RCFFDVAVDGEAAGRIELELLDELLPETCENFRLLCGD---GAPSG---------------------------------FGYAGANLARRVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0A7S3NRJ3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NRJ3_9STRA) HSP 1 Score: 152 bits (383), Expect = 4.320e-39 Identity = 99/257 (38.52%), Postives = 130/257 (50.58%), Query Frame = 1 Query: 70 STGRGWYQRYQRMGPDAFRKARAPNPFEWDTPSAAPAPEAGEEXXXXXXXXXXXXRRRAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVT-GTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRA-VYGMYSIRGKPVSEITIEKCG 834 S G GWY++Y++ GPD+FR+ P PF++D AA A G+ R FFD+ V GR+EFEL +LLPVT ENF LC+G + YKGS R++ G IMGGDV GG SHSA+ R++ DE F +PH+ G+L+ AN+G+ TNGSQFYIT + H+DGR VAFGRV G +V+ + +Y RG P ITI G Sbjct: 45 SPGHGWYEKYKKFGPDSFRRWERPKPFDFD---AADAQVLGK-------------RTYCFFDIGVAESKVGRIEFELLDELLPVTCENFKLLCSGFAPSGFR------------------------------------YKGSHFIRLMARGAAIMGGDVATAGG--SHSAWK-QRYYADEGFFVPHSQAGILSSANAGIDTNGSQFYITLKECPHMDGRCVAFGRVATGYDVITGLIKDVYMQRGIPTKSITILDAG 246
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0A0L0DSF0_THETB (Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSF0_THETB) HSP 1 Score: 143 bits (360), Expect = 5.680e-35 Identity = 80/200 (40.00%), Postives = 105/200 (52.50%), Query Frame = 1 Query: 241 RAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCGEI 840 R FFD+S+ GVPAGR+ F+L +D+ P TSENF LC G +G+A L YKGS HRV+ I GGD + G S + F DE F + HT PGLL+MAN+G TNGSQF++TT HLDG+ V FG V KG+ VVR + + + +P+ + IE CGE+ Sbjct: 10 RTFFDISIGGVPAGRIVFKLYTDITPKTSENFRALCTGEKGVGESGKA-------------------------------LSYKGSTFHRVIEDFMIQGGDFTNHNGTGGESIYGAK--FEDENFEVMHTKPGLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLKGMGVVREIEALETADDRPIDAVVIEDCGEL 176
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Match: A0E564_PARTE (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E564_PARTE) HSP 1 Score: 136 bits (342), Expect = 2.990e-34 Identity = 75/200 (37.50%), Postives = 108/200 (54.00%), Query Frame = 1 Query: 241 RAFFDMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFNGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEKCGEI 840 + FFD+S++ P+GR+ FEL +D P T+ENF +LC G TV+ +G+ L YKGS HR++ + GGD + G S + R FPDE F + HT PGLL+MAN+G +TNGSQF+ITT L+G+ FG+V GLEV+ A+ + +G+P ++ I CGE+ Sbjct: 18 KVFFDISINNAPSGRIIFELFADATPKTAENFRKLCIGDTVSKISGKT-------------------------------LHYKGSSFHRIIPSFMVQGGDFTNHNGTGGESIYG--RTFPDENFTLKHTTPGLLSMANAGPNTNGSQFFITTVPCPWLNGKHTVFGKVASGLEVLNAIEYCGTQQGRPSKKVEIYDCGEL 184 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17711.1 >prot_E-siliculosus-1a_M_contig98.17711.1 ID=prot_E-siliculosus-1a_M_contig98.17711.1|Name=mRNA_E-siliculosus-1a_M_contig98.17711.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=281bp MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFback to top mRNA from alignment at E-siliculosus-1a_M_contig98:307299..310510+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17711.1 ID=mRNA_E-siliculosus-1a_M_contig98.17711.1|Name=mRNA_E-siliculosus-1a_M_contig98.17711.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3212bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:307299..310510+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:307299..310510+ >mRNA_E-siliculosus-1a_M_contig98.17711.1 ID=mRNA_E-siliculosus-1a_M_contig98.17711.1|Name=mRNA_E-siliculosus-1a_M_contig98.17711.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1686bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:307299..310510+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |