mRNA_E-siliculosus-1a_M_contig98.17708.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE) HSP 1 Score: 649 bits (1673), Expect = 8.350e-229 Identity = 350/427 (81.97%), Postives = 355/427 (83.14%), Query Frame = 2 Query: 11 DTGKPCMCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSSEGGALLSDAKATXXXXXXXXXPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTVGRLQQQ-------QGRGTDVVDVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSSAVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAPGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACMLSSTAQRIRKGRALARREAKA 1270 DTGKPCMCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLS NNHLQQLRASVDASWSSFSTAWDARRARGSGSGS++GG L PAAGFVMPPCTHRGAPPAGSGRGRGHTAVE+GERT AAEAECPECAAIAAAHVLAGAGA QGRGTDVVDVWAGSSLGVLNADAL RALTFL+PRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDW+PKSSAVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAPGCAA ACMLSSTAQRIRKGRALARREAKA Sbjct: 148 DTGKPCMCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSANNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTDGGGPLP--------------PAAGFVMPPCTHRGAPPAGSGRGRGHTAVEQGERTLAAEAECPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALQRALTFLEPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAPGCAAAGADAGGGGSKWRGSSASGARGNVSGG--------ACMLSSTAQRIRKGRALARREAKA 552
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: D7FI17_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI17_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 1.440e-160 Identity = 259/302 (85.76%), Postives = 266/302 (88.08%), Query Frame = 2 Query: 29 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSSEGGALLSDAKATXXXXXXXXXPAAGFVMPPCTHRGAPPA-GSGRGRGHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTVGRLQQQQGRGTDVVDVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSSAVTQGWREFFFE-FEATWLEWLAAGQNFES----SCLVG 916 MCARIA QQRQRASAARRLRQAEDERRLE LVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGS+EGG L SDAKAT PAAGFVMPPCTHRGAPPA GSGRGR HTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATT GRLQQQQGRGTDV DVWAGSSLGVLNADALHR+LTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDW+PKSSAVTQ R F ATW W A G+ + S +C+VG Sbjct: 1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLP---PAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ--RSFILRCVGATWSCW-AGGKCWVSMLLIACVVG 296
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A835Z6K8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K8_9STRA) HSP 1 Score: 156 bits (395), Expect = 3.230e-39 Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 2 Query: 584 SSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSSAVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASE 1012 S L +L D R L LQP DL ELAQAS+G + AAD++ +W +W RFG +W S+ + AA RWH H WDP A QGW+ FF +F +W+ W AAG N E C++G++G LY++TDF+ HPGSP+TL+++AG DA++ Sbjct: 98 SFLPLLPDDLRLRCLALLQPEDLFELAQASKGCQAAADAEPLWAGLWQYRFGRVWASQPLQDAAERWHCH-WDPLRHAPLQGWKLFFSQFALSWIGWAAAGSNTEERCILGINGALYNVTDFLMEHPGSPDTLLDSAGCDATQ 239
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A7S2FKK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKK9_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.130e-38 Identity = 77/175 (44.00%), Postives = 101/175 (57.71%), Query Frame = 2 Query: 569 DVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADS------QLVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSSAVTQGWREFFFEFEATWLEWLAAGQNFES---SCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSL 1066 DV + +LG L + + FL L +A + DS + W+ W RFGA WES + + AA R H H WDP WR FFFE+E +WLEW AGQN E+ CL+GV+G +YD++ F+ HPG+PET+++NAG D +EFFEDVGHS AR MKSL Sbjct: 199 DVVSDLTLGCLPVETVLLTFDFLDLASLFSIAAVDQALNSLCDSTDTAFNECAWKSQWLRRFGAHWESSLMQAAAERHHSH-WDPSQPPPGGSWRRFFFEYEESWLEWSCAGQNVENVNQGCLIGVYGTVYDVSFFLDEHPGTPETILDNAGGDTTEFFEDVGHSTSARRRMKSL 372
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A7S3Y614_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y614_HETAK) HSP 1 Score: 148 bits (374), Expect = 6.380e-37 Identity = 70/156 (44.87%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 599 LNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDP-KSSAVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKS 1063 ++ + L +FLQP DL+ L Q +G ++ + LVW++ W RFG + + KK W + W+ +QGW+ FFFEFEA+W+ +AAG + SSCL+G+ G LYDIT+F+ HPGSPETL+ENAG D ++FF +VGHS AR LM++ Sbjct: 91 MHQNQLIHVSSFLQPEDLVRLGQTCKGGNKSCQTDLVWKKQWENRFGKLIVTNAWKKCLEFWDI-SWEVFVRKPPSQGWKRFFFEFEASWINMVAAGHDTLSSCLIGIEGGLYDITNFIDLHPGSPETLLENAGRDVTQFFNEVGHSATARRLMRN 245
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: W7TKW6_9STRA (Cytochrome b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW6_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.800e-33 Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = 2 Query: 632 FLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSSAVTQG-----WREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAP 1081 +LQPRD+L L SR AR + + VWR W ARFG IW S +KA D + ++ T G WR F+ FE W WL AG+N E SC VG+ G +YD+T F+ HPGS ET++ NAG DA+ FF+DVGHS AR +M + P Sbjct: 316 YLQPRDVLRLTPVSRAARRLGEGEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIVPP 470
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A7S3Y620_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y620_HETAK) HSP 1 Score: 132 bits (331), Expect = 2.590e-31 Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 2 Query: 674 RGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDP-KSSAVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKS 1063 +G ++ + LVW++ W RFG + + KK W + W+ +QGW+ FFFEFEA+W+ +AAG + SSCL+G+ G LYDIT+F+ HPGSPETL+ENAG D ++FF +VGHS AR LM++ Sbjct: 57 KGGNKSCQTDLVWKKQWENRFGKLIVTNAWKKCLEFWDI-SWEVFVRKPPSQGWKRFFFEFEASWINMVAAGHDTLSSCLIGIEGGLYDITNFIDLHPGSPETLLENAGRDVTQFFNEVGHSATARRLMRN 186
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A7S2B084_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B084_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.450e-28 Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 2 Query: 590 LGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQ------LVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSS---AVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAG 997 L +L D + + F+ R +L LA D+ VWR+ W ARFG+IW S++ +A +R + WDPK A +GW+ FFFEF TW+ W A QN CL+G+HG +Y++TDF+ HPGSP+T+++NAG Sbjct: 18 LSLLGTDTVMLLIEFVDLRAVLSLAGTCSFLSHLCDNNETRHCNCVWRQRWTARFGSIWTSDLVSQAVKR-DGNAWDPKGGCPPAGCKGWKAFFFEFNETWINWTLAMQNTTECCLIGLHGGVYNMTDFLEVHPGSPDTILDNAG 161
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A7S2SV73_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV73_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.730e-27 Identity = 80/218 (36.70%), Postives = 102/218 (46.79%), Query Frame = 2 Query: 503 GAGAATTVGRLQQQQGRGTDVVDVWAGSS-----LGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQ----LVWREVWWARFGAIWESEICKKAARRWHLHDWDPK--------------SSAVTQG--WREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAP 1081 GAGA T V +QG + V + S L L D L FL LL +A SR A + DS WR+ W RFG +W + + A +R H W P S G WR FF+EF+ W++W G N + CLV +HG +YD+T F HPGS ETL++NAG DA+ FE VGHS AR M L + P Sbjct: 184 GAGAETPVLASHHRQGSKSPKVQAFGAGSGTRLWLDKLPHDGSLHVLGFLDRMSLLPVALTSRLAAQLCDSPHFEGCAWRDRWLRRFGHLWSTREIQAALQR-HGVSWFPSTGLHEAEARNGPAGSFGAPNGLSWRRFFYEFDEAWMDWALVGMNTPARCLVALHGTIYDLTQFKQEHPGSVETLLDNAGGDATPMFEGVGHSRVARRQMAQLVRIEP 400
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Match: A0A482SPR7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPR7_9ARCH) HSP 1 Score: 119 bits (299), Expect = 2.830e-26 Identity = 55/158 (34.81%), Postives = 88/158 (55.70%), Query Frame = 2 Query: 587 SLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWDPKSS--AVTQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGL 1054 SL L+++ L L++L +++ ++ S RE S ++W ++W +G+ W + ++ ++ WDP + GW F+ FE WL+WL AG + CL+ + +YD+TDFM HPGSPETL E AG DA+E F ++ H+ A GL Sbjct: 100 SLNKLSSELLVHLLSYLDTHEIVTISITSPRMRENFTSDIIWEQLWRVTYGSHWRHALIRQLRESRDIY-WDPADNFGPPQTGWYHFYLAFEVCWLDWLLAGYATQDKCLLAIDNAIYDVTDFMFEHPGSPETLSEGAGCDATELFYEISHTSFAAGL 256 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17708.1 >prot_E-siliculosus-1a_M_contig98.17708.1 ID=prot_E-siliculosus-1a_M_contig98.17708.1|Name=mRNA_E-siliculosus-1a_M_contig98.17708.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=414bp MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHback to top mRNA from alignment at E-siliculosus-1a_M_contig98:284731..286479+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17708.1 ID=mRNA_E-siliculosus-1a_M_contig98.17708.1|Name=mRNA_E-siliculosus-1a_M_contig98.17708.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:284731..286479+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:284731..286479+ >mRNA_E-siliculosus-1a_M_contig98.17708.1 ID=mRNA_E-siliculosus-1a_M_contig98.17708.1|Name=mRNA_E-siliculosus-1a_M_contig98.17708.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2484bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:284731..286479+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |