mRNA_E-siliculosus-1a_M_contig98.17700.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17700.1 vs. uniprot
Match: A0A6H5L5X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X5_9PHAE) HSP 1 Score: 886 bits (2289), Expect = 8.960e-311 Identity = 583/676 (86.24%), Postives = 600/676 (88.76%), Query Frame = 1 Query: 1177 MEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSATTPSPGETPTSKKALSHSRSISSFDLGPSLEKNGLARGGDASLGAITNRNVAGIEEALEKVAKYRERIVILKEDRRAKKALVDQLRHELEEKEATLSAENERLRLERTDIKDRAKGLWVDLENLRRDAENNAAENNISRQDREQLRKQVDRLRRERNSARADAMRWLEQQHAMSSSRLLPVGA--GAGTADEANGEGFEGXXXXXXXXGGGIFPKTPGPGEAGPPMMGSWAQTAPGGSMTGMGDGGMLAHQQVSVDQKAAATIAKLKNKVNRLRRERDDAEVQASNWLKSEQERMALNSNSGSTSSNFXXXXXXTALIEAGPAXXXXXXXXXXSSGGPVVASLKAESLQLKKELQNARAEAERFKRKLGSGSGLSPNVAPAGRGGSARGLVGSGQDKGLDDSEPQEARLALGRLLGQALNLLDPQAAADAVAVAAKRMSAPXXXXXXXXXXXXXXXXXXXXGAAGTMKLSTGEVSTSSTVQTSATEALSPQSVHEGTPPRAEEELEAXXXXXXXXXXXXXKAFVAGLKDNGLTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPALSGVKAAVAAINISGYSAEPRKKEVGRHPFTASGLVGSKTTNME 3198
MEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSATTPSPGE TSKKALSHSRSIS FDLG SLEKNGLARGGDASLGAITNRNVAGIEEALEKVAKYRERIVILKEDRRAKKALVDQLRHELEEK+ATLSAENERLRLER DIKDRA+GLWVDLENLRRDA KQVDRLRRERNSARADAMRWLEQQHAMSSSR LPVGA GAGTA+E+NGEGFEG GGIFP+TPGPGEAGPPMMGSWAQTAPGGSMTGMGDGGMLAHQ VSVDQKAAATIAKLKNKVNRLRRERDDAEVQASNWLK EQERMALNSNSG XXXXX TALIEA PA SSGGPVVASLKAESLQLKKELQNARAEAER K+KLGS +GLSPNVA AG GGSARGLVGSGQD+ +DDSEPQEARLALG LLG+ALNLLDPQAAADAVAVAAKRMSAP XXXXXXXXXXXXXXXX AAGTMKLS GEVSTSSTVQT+ATEALSPQSV EGTPPRAEEE+EA XXXXXXXXXXXX AFVAGLK++GLTG XXXXXXXXXXXXXXXXXXXXXXXXXXXX PALS VKAAVAAIN SG SA+PR+KEVGRHPF A+GLVGSKTTNME
Sbjct: 1 MEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSATTPSPGEITTSKKALSHSRSISLFDLGQSLEKNGLARGGDASLGAITNRNVAGIEEALEKVAKYRERIVILKEDRRAKKALVDQLRHELEEKKATLSAENERLRLERNDIKDRAQGLWVDLENLRRDA------------------KQVDRLRRERNSARADAMRWLEQQHAMSSSRSLPVGAVAGAGTAEESNGEGFEGDGGAGGGRVGGIFPQTPGPGEAGPPMMGSWAQTAPGGSMTGMGDGGMLAHQ-VSVDQKAAATIAKLKNKVNRLRRERDDAEVQASNWLKGEQERMALNSNSGXXXXXXXXXXXSTALIEANPAAAGGGGRV--SSGGPVVASLKAESLQLKKELQNARAEAERLKKKLGSRAGLSPNVASAGSGGSARGLVGSGQDEEVDDSEPQEARLALGHLLGKALNLLDPQAAADAVAVAAKRMSAPEVAXXXXXXXXXXXXXXXXRDAAGTMKLSAGEVSTSSTVQTAATEALSPQSVDEGTPPRAEEEIEAAXXXXXXXXXXXXXAFVAGLKEDGLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALSVVKAAVAAINSSGDSAKPREKEVGRHPFMAAGLVGSKTTNME 655
BLAST of mRNA_E-siliculosus-1a_M_contig98.17700.1 vs. uniprot
Match: D7FZQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ3_ECTSI) HSP 1 Score: 751 bits (1939), Expect = 1.400e-261 Identity = 386/395 (97.72%), Postives = 388/395 (98.23%), Query Frame = 1 Query: 583 RSQPSAAQEGGG---AGGSGRPLSVGRSRTGRTAETRRALRKRSQSVGDKMALVGPGAPSPTTFSPQAPAQPNLLLYHVSRPEPRARWVFNLSKHTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPEIAAKNNMEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSATTPSPGETPTSKKALSHSRSISSFDLGPSLEKNGLARGGDASLGAITNRNVAGIEEALEKVAKYRERIVILKEDRRAKKALVDQLRHELEEKEATLSAENERLRLERTDIKDRAKGLWVDLENLRRDA 1758
RSQPSAAQEGGG AGGSGRPLSVGRSRTGRTAETRRALRKRSQSVGDKMALVGPGAPSPTTFSPQAP QPNLLLYHVSRPEPRARWVFNLSKHTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPEIAAKNNMEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSS TTPSPGETPTSKKALSHSRSISSFDLGPSLEKNGLAR GDASLGAITNRNVAGIEEALEKVAKYRERIVILK+DRRAKKAL+DQLRHELEEKEATLSAENERLRLER DIKDRAKGLWVDLENLRRDA
Sbjct: 8 RSQPSAAQEGGGSGGAGGSGRPLSVGRSRTGRTAETRRALRKRSQSVGDKMALVGPGAPSPTTFSPQAPVQPNLLLYHVSRPEPRARWVFNLSKHTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPEIAAKNNMEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSVTTPSPGETPTSKKALSHSRSISSFDLGPSLEKNGLARAGDASLGAITNRNVAGIEEALEKVAKYRERIVILKDDRRAKKALMDQLRHELEEKEATLSAENERLRLERNDIKDRAKGLWVDLENLRRDA 402
BLAST of mRNA_E-siliculosus-1a_M_contig98.17700.1 vs. uniprot
Match: D7FZQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ2_ECTSI) HSP 1 Score: 480 bits (1235), Expect = 4.640e-156 Identity = 349/446 (78.25%), Postives = 356/446 (79.82%), Query Frame = 1 Query: 1864 MRWLEQQHAMSSSRLLPVGAGAGTADEANGEGFEGXXXXXXXXGGGIFPKTPGPGEAGPPMMGSWAQTAPGGSMTGMGDGGMLAHQQVSVDQKAAATIAKLKNKVNRLRRERDDAEVQASNWLKSEQERMALNSNSGSTSSNFXXXXXXTALIEAGPAXXXXXXXXXXSSGGPVVASLKAESLQLKKELQNARAEAERFKRKLGSGSGLSPNVAPAGRGGSARGLVGSGQDKGLDDSEPQEARLALGRLLGQALNLLDPQAAADAVAVAAKRMSAPXXXXXXXXXXXXXXXXXXXX-GAAGTMKLSTGEVSTSSTVQTSATEALSPQSVHEGTPPRAEEELEAXXXXXXXXXXXXXKAFVAGLKDNGLTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPALSGVKAAVAAINISGYSAEPRKKEVGRHPFTASGLVGSKTTNME 3198
MRWLEQQHAMSSSR LPV AGAGTADEANGE EG G GIFPKTPGPGE G PM+ SWAQTAPGGSMTGMGDGGMLAHQ VSVDQKAAATIAKLKNKVNRLRRERDDAEVQASNWLKSEQERMALNS XXXXXX XXXXXXXX SSGGPVVASLKAESLQLKKELQ+ARAEAERFKRKL SGSGLSPNV PAG GG ARGLVG GQD+GLDDSEPQEARLALGRLLGQALNLLDPQAAADAVAVAAKRMSAP XXXXXXXXXXXXXXXXXX GAAG MKLSTGE S+HEG+PPRAEEELEA KAFVAGLKDNGLTG XXXXXXXXXXXXXXXXXXAPALSGVKAAVAAINISGYSAEPR+KEVGRHPF A+GLV SKTTNME
Sbjct: 1 MRWLEQQHAMSSSRSLPVVAGAGTADEANGEALEGDGGAGGGRGDGIFPKTPGPGEGGHPMVASWAQTAPGGSMTGMGDGGMLAHQ-VSVDQKAAATIAKLKNKVNRLRRERDDAEVQASNWLKSEQERMALNSXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXRVSSGGPVVASLKAESLQLKKELQDARAEAERFKRKLASGSGLSPNVTPAGSGGFARGLVGGGQDEGLDDSEPQEARLALGRLLGQALNLLDPQAAADAVAVAAKRMSAPEVXXXXXXXXXXXXXXXXXXQGAAGMMKLSTGE------------------SIHEGSPPRAEEELEAVAMESAAATAGGGKAFVAGLKDNGLTGDEKKDVGASGAXXXXXXXXXXXXXXXXXXAPALSGVKAAVAAINISGYSAEPREKEVGRHPFMAAGLVESKTTNME 425
BLAST of mRNA_E-siliculosus-1a_M_contig98.17700.1 vs. uniprot
Match: A0A6H5KYF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF6_9PHAE) HSP 1 Score: 412 bits (1060), Expect = 1.330e-130 Identity = 310/389 (79.69%), Postives = 313/389 (80.46%), Query Frame = 1 Query: 1 MQLQPPPFPTSPQSPNDGGVGSRDPNPFLHQGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATVPRGRYSAPPLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGGLVRPASSGFEEHRYDATELQPRVRRSSSDQRLDRRFDGEPEPDPDRRRVTNTPGR---YRSQPSAAQEGGGAGGSGRPLSVGRSRTGRTAETRRALRKRSQSVGDKMALVGPGAPSPTTFSPQAPAQPNLLLYHVSRPEPRARWVFNLSKHTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPE 1158
MQLQPPPFP SPQ PND VGSRDPNPFLHQGNS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GS GLVRPASSGFEEHRYD TELQ RVRRSSSDQRLD R DGEPE GR GRPLSVGRSR+GRTAE RR+LRKRSQSVGDKM LVGPGAPSP F+P APAQPNLLLYHVSRPEPRARWVFNLSK TNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPE
Sbjct: 1 MQLQPPPFPASPQRPNDSRVGSRDPNPFLHQGNSSSSTSRPYISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDGLVRPASSGFEEHRYDTTELQQRVRRSSSDQRLDWRLDGEPEXXXXXXXXXXXXGRCXXXXXXXXXXXXXXXXXXXGRPLSVGRSRSGRTAELRRSLRKRSQSVGDKMVLVGPGAPSPP-FNPPAPAQPNLLLYHVSRPEPRARWVFNLSKPTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPE 381 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17700.1 >prot_E-siliculosus-1a_M_contig98.17700.1 ID=prot_E-siliculosus-1a_M_contig98.17700.1|Name=mRNA_E-siliculosus-1a_M_contig98.17700.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1067bp MQLQPPPFPTSPQSPNDGGVGSRDPNPFLHQGNSSSSSTSRPSPSQQQQQback to top mRNA from alignment at E-siliculosus-1a_M_contig98:170623..180031- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17700.1 ID=mRNA_E-siliculosus-1a_M_contig98.17700.1|Name=mRNA_E-siliculosus-1a_M_contig98.17700.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9409bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:170623..180031- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:170623..180031- >mRNA_E-siliculosus-1a_M_contig98.17700.1 ID=mRNA_E-siliculosus-1a_M_contig98.17700.1|Name=mRNA_E-siliculosus-1a_M_contig98.17700.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6402bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:170623..180031- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |