Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 516 |
| Model size | 660 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.5142207-UTR-E-siliculosus-1a_M_contig98:98396..98539 | 1622936556.5142207-UTR-E-siliculosus-1a_M_contig98:98396..98539 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 98397..98539 + |
| 1696251129.4614031-UTR-E-siliculosus-1a_M_contig98:98396..98539 | 1696251129.4614031-UTR-E-siliculosus-1a_M_contig98:98396..98539 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 98397..98539 + |
| 1622936556.547297-UTR-E-siliculosus-1a_M_contig98:99055..99056 | 1622936556.547297-UTR-E-siliculosus-1a_M_contig98:99055..99056 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 99056..99056 + |
| 1696251129.4843557-UTR-E-siliculosus-1a_M_contig98:99055..99056 | 1696251129.4843557-UTR-E-siliculosus-1a_M_contig98:99055..99056 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 99056..99056 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.5300944-CDS-E-siliculosus-1a_M_contig98:98539..99055 | 1622936556.5300944-CDS-E-siliculosus-1a_M_contig98:98539..99055 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 98540..99055 + |
| 1696251129.469775-CDS-E-siliculosus-1a_M_contig98:98539..99055 | 1696251129.469775-CDS-E-siliculosus-1a_M_contig98:98539..99055 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 98540..99055 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17691.1 >prot_E-siliculosus-1a_M_contig98.17691.1 ID=prot_E-siliculosus-1a_M_contig98.17691.1|Name=mRNA_E-siliculosus-1a_M_contig98.17691.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=172bp
MHTPRTPINEFLQALWHNSPPPLPAPTPIKNFCTQNDYARPRPACPHVLS
MAATPPVLLVPLPLVANTQPDSTKAAMILKPYTHARLCVMFYYYSARCWR
SRPRWSSGAESTRTLSRYPPIVRGSRPIAQVALDDSTAASKWPPRITLAR
AKHQEYRDATSKKAPRQWISW* back to topmRNA from alignment at E-siliculosus-1a_M_contig98:98397..99056+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17691.1 ID=mRNA_E-siliculosus-1a_M_contig98.17691.1|Name=mRNA_E-siliculosus-1a_M_contig98.17691.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:98397..99056+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGTGATGATTGTTTCGTTCAATTTATCTTTTCAACTTTTATTGGTCTCGT
TAAGACAACCTGCCACTCACTCAACAACAGGAGGTATGTAGCGAAACACA
CTCGGCAACAAACACACAGCAGCAGCAGAGTGCTACGCAACTTATGCATA
CTCCCCGTACACCCATAAACGAATTTCTGCAAGCACTATGGCATAATTCC
CCCCCACCGCTCCCCGCACCTACACCCATAAAGAATTTCTGTACGCAAAA
CGACTATGCCCGCCCCCGTCCCGCATGCCCCCATGTTCTATCCATGGCAG
CCACGCCGCCCGTGCTCCTCGTCCCCCTCCCCCTAGTGGCTAACACACAA
CCAGATTCGACCAAAGCAGCAATGATCTTAAAACCATACACACACGCTCG
TCTGTGCGTCATGTTCTACTACTACAGTGCTCGTTGTTGGCGCTCTCGTC
CCAGGTGGAGCAGCGGCGCAGAAAGCACGCGCACGCTCTCCAGATACCCC
CCCATCGTGCGCGGTAGTAGACCCATAGCCCAAGTCGCGCTCGACGATAG
TACCGCTGCCTCAAAATGGCCCCCTAGAATAACTCTCGCGCGCGCGAAAC
ACCAAGAGTACCGCGACGCAACGAGTAAAAAGGCCCCTCGTCAATGGATT
TCCTGGTAGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:98397..99056+ >mRNA_E-siliculosus-1a_M_contig98.17691.1 ID=mRNA_E-siliculosus-1a_M_contig98.17691.1|Name=mRNA_E-siliculosus-1a_M_contig98.17691.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1032bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:98397..99056+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCATACTCCCCGTACACCCATAAACGAATTTCTGCAAGCACTATGGCA
TAATTCCCCCCCACCGCTCCCCGCACCTACACCCATAAAGAATTTCTGTA
CGCAAAACGACTATGCCCGCCCCCGTCCCGCATGCCCCCATGTTCTATCC
ATGGCAGCCACGCCGCCCGTGCTCCTCGTCCCCCTCCCCCTAGTGGCTAA
CACACAACCAGATTCGACCAAAGCAGCAATGATCTTAAAACCATACACAC
ACGCTCGTCTGTGCGTCATGTTCTACTACTACAGTGCTCGTTGTTGGCGC
TCTCGTCCCAGGTGGAGCAGCGGCGCAGAAAGCACGCGCACGCTCTCCAG
ATACCCCCCCATCGTGCGCGGTAGTAGACCCATAGCCCAAGTCGCGCTCG
ACGATAGTACCGCTGCCTCAAAATGGCCCCCTAGAATAACTCTCGCGCGC
GCGAAACACCAAGAGTACCGCGACGCAACGAGTAAAAAGGCCCCTCGTCA
ATGGATTTCCTGGTAGATGCATACTCCCCGTACACCCATAAACGAATTTC
TGCAAGCACTATGGCATAATTCCCCCCCACCGCTCCCCGCACCTACACCC
ATAAAGAATTTCTGTACGCAAAACGACTATGCCCGCCCCCGTCCCGCATG
CCCCCATGTTCTATCCATGGCAGCCACGCCGCCCGTGCTCCTCGTCCCCC
TCCCCCTAGTGGCTAACACACAACCAGATTCGACCAAAGCAGCAATGATC
TTAAAACCATACACACACGCTCGTCTGTGCGTCATGTTCTACTACTACAG
TGCTCGTTGTTGGCGCTCTCGTCCCAGGTGGAGCAGCGGCGCAGAAAGCA
CGCGCACGCTCTCCAGATACCCCCCCATCGTGCGCGGTAGTAGACCCATA
GCCCAAGTCGCGCTCGACGATAGTACCGCTGCCTCAAAATGGCCCCCTAG
AATAACTCTCGCGCGCGCGAAACACCAAGAGTACCGCGACGCAACGAGTA
AAAAGGCCCCTCGTCAATGGATTTCCTGGTAG back to top
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