mRNA_E-siliculosus-1a_M_contig98.17690.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A6H5KVS5_9PHAE (GUN4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS5_9PHAE) HSP 1 Score: 486 bits (1250), Expect = 1.290e-168 Identity = 249/257 (96.89%), Postives = 251/257 (97.67%), Query Frame = 3 Query: 30 MVSCAVLMAVAGMAMLGSSTTSAFTASPANIRSQHSRAAARSSCDHAASTQAPSRHPAAAKAGGRRYASQLRMSTAEETPAAAAA--VAREPTRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
MVSCAVLMAVAG+AMLG STTSAFTASP +IRSQHSRAAAR SCDHAASTQAPSRH AAAKAGGRRYASQLRMSTAEETPAAAAA VAREPTRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK
Sbjct: 1 MVSCAVLMAVAGIAMLGPSTTSAFTASPTSIRSQHSRAAARPSCDHAASTQAPSRHHAAAKAGGRRYASQLRMSTAEETPAAAAATAVAREPTRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 257
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: D7FZN6_ECTSI (Tetrapyrrole-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN6_ECTSI) HSP 1 Score: 375 bits (964), Expect = 7.270e-126 Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 3 Query: 30 MVSCAVLMAVAGMAMLGSSTTSAFTASPANIRSQHSRAAARSSCDHAASTQAPSRHPAAAKAGGRRYASQLRMSTAEETPAAAAAVAREPTRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVE 641
MVSCAVLMAVAGMAMLGSSTTSAFT SPA IRSQHSRAAAR SCDHAA TQAPSRHP AAKAGGRRYASQLRMSTAEETPAAAAAVAREPTRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEV+
Sbjct: 1 MVSCAVLMAVAGMAMLGSSTTSAFT-SPAIIRSQHSRAAARPSCDHAARTQAPSRHPVAAKAGGRRYASQLRMSTAEETPAAAAAVAREPTRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVQ 203
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A836C7C7_9STRA (GUN4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C7_9STRA) HSP 1 Score: 276 bits (706), Expect = 6.700e-87 Identity = 126/160 (78.75%), Postives = 138/160 (86.25%), Query Frame = 3 Query: 306 DIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEW 785
D P L S+ GIDYVPLATMLATGD KGADQFTRDALI+AAG GSQKR FVYWT+VKNIPN DLAT+E LWL YS GKFGYSVQ ++W++ KGDFENFCR IGW T E+ERKLRWFGANEFIYD +RAP+GHLPLTSALRGT LLKEL+ HPVWETEW
Sbjct: 63 DAPDNLSSDAGIDYVPLATMLATGDFKGADQFTRDALIRAAGEGSQKRGFVYWTDVKNIPNKDLATIEKLWLKYSGGKFGYSVQAEVWKRKKGDFENFCRTIGWNTKSEEIERKLRWFGANEFIYDAERAPKGHLPLTSALRGTQLLKELLNHPVWETEW 222
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A1Z5KQ11_FISSO (GUN4 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ11_FISSO) HSP 1 Score: 256 bits (654), Expect = 4.350e-79 Identity = 119/162 (73.46%), Postives = 139/162 (85.80%), Query Frame = 3 Query: 309 IPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
IPT LPS CG+DYVPLATMLATGDL ADQFTRDALI+ +GA ++ R+FVY+T+VKNIP+TDLATME LW +SKGKFGYSVQK W ++KGDFE FCR+IGWTT D EVERK RWFGA+EFIYDV +AP GHLPLTSALRGT+L+K L+ HPVW+ E +WK
Sbjct: 64 IPTNLPSACGMDYVPLATMLATGDLVAADQFTRDALIEISGAKAKGRNFVYFTDVKNIPSTDLATMERLWNKFSKGKFGYSVQKKKWNQSKGDFEVFCRKIGWTTTDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNE-DWK 224
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A7S2P4E3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4E3_9STRA) HSP 1 Score: 249 bits (635), Expect = 2.710e-76 Identity = 117/163 (71.78%), Postives = 134/163 (82.21%), Query Frame = 3 Query: 306 DIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
+IPT LPS G DYVPLATMLATG L ADQFTRDALI+ +GA ++ R FVYWTEVKNIPN DLAT+E LW +S GKFGY+VQK WR++KGDFE FCR+IGWTT D EVERK RWFGA+EFIYDV +AP GHLPLTSALRGT L+K L+ HPVWE + +WK
Sbjct: 60 EIPTKLPSAVGKDYVPLATMLATGQLAEADQFTRDALIEISGAKAKGRSFVYWTEVKNIPNEDLATIERLWNKFSGGKFGYTVQKKKWRQSKGDFEAFCRKIGWTTQDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTPLIKNLLNHPVWEND-DWK 221
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A7S2R3S6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3S6_9STRA) HSP 1 Score: 249 bits (635), Expect = 4.590e-76 Identity = 116/163 (71.17%), Postives = 136/163 (83.44%), Query Frame = 3 Query: 306 DIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
+IPT LPS+ G+DYVPLATMLATG L ADQFTRDALIK GA + R+FVYWTEVK IP+TDLAT+E LW +S GKFGYSVQK WR++K DFE FCR+IGWTT D +VERK RWFGA+EFIYDV +AP GHLPLTSALRGT+L+K+L+ HPVWE + +WK
Sbjct: 76 EIPTNLPSDMGMDYVPLATMLATGQLAEADQFTRDALIKLCGATEKGRNFVYWTEVKLIPSTDLATIERLWNKFSGGKFGYSVQKKKWRQSKNDFEVFCRKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQLLTHPVWEND-DWK 237
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A6S8ZHG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZHG1_9STRA) HSP 1 Score: 248 bits (634), Expect = 5.490e-76 Identity = 117/163 (71.78%), Postives = 138/163 (84.66%), Query Frame = 3 Query: 306 DIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
DIPT LPS+ G+DYVPLATMLATG L ADQFTRDALI AG+ ++ RDFVY+TEVKNIP+TDLAT+E LW +SKGKFGYSVQK +R+ K DFE FCR+IGWTT D EVERK RWFGA+EFIYDV +AP GHLPLTSALRGT+L+KEL+ HPVW+ + +W+
Sbjct: 69 DIPTNLPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKAKGRDFVYFTEVKNIPSTDLATIERLWSKFSKGKFGYSVQKRKYRQAKNDFEAFCRKIGWTTKDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKELLNHPVWDND-DWQ 230
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A7S2UF66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF66_9STRA) HSP 1 Score: 248 bits (632), Expect = 9.890e-76 Identity = 115/163 (70.55%), Postives = 137/163 (84.05%), Query Frame = 3 Query: 306 DIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
+IPT LPS+ G+DYVPLATMLATG L ADQFTRDALI AG+ + RDFVY+TEVKN+P TDLATME LW +SKGKFGYSVQK W+++KGDFE FC +IGWTT D +VERK RWFGA+EFIYDV +AP GHLPLTSALRGT+LLK+++ HPVW+ + +WK
Sbjct: 68 EIPTNLPSDVGMDYVPLATMLATGQLAEADQFTRDALIVIAGSKEKGRDFVYFTEVKNMPATDLATMERLWNKFSKGKFGYSVQKKKWKQSKGDFEAFCSKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLLKQMLNHPVWDND-DWK 229
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A7S0FNL4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FNL4_9STRA) HSP 1 Score: 246 bits (629), Expect = 2.430e-75 Identity = 114/163 (69.94%), Postives = 136/163 (83.44%), Query Frame = 3 Query: 306 DIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
+IPT LPS+ G+DYVPLATMLATG L ADQFTRDALI AG+ + RDFVYWTEVK IP TDLAT+E LW +S GKFGYSVQK +W+++KGDFE +C++IGWTT D EVERK RWFGA+EF YDV +AP GHLPLTSALRGT+L+K+L+ HPVWE + +WK
Sbjct: 62 EIPTNLPSDVGMDYVPLATMLATGQLVEADQFTRDALIVLAGSKEKGRDFVYWTEVKEIPATDLATIERLWNKFSGGKFGYSVQKRIWKRSKGDFELWCKKIGWTTQDGEVERKKRWFGASEFTYDVKKAPEGHLPLTSALRGTSLIKQLLDHPVWEND-DWK 223
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Match: A0A7S2MK00_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MK00_9STRA) HSP 1 Score: 244 bits (624), Expect = 1.590e-74 Identity = 115/162 (70.99%), Postives = 135/162 (83.33%), Query Frame = 3 Query: 309 IPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 794
IPT LPS+ G+DYVPLATMLATG L ADQFTRDALI AG+ + RDFVY+TEVKNIP+TDLAT+E LW +S GKFGYSVQK W+++KGDF+ FCR+IGW T D EVERK RWFGA+EFIYDV +AP GHLPLTSALRGT+L +EL+ HPVWE + +WK
Sbjct: 68 IPTVLPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKEKGRDFVYFTEVKNIPSTDLATIERLWNKFSGGKFGYSVQKRKWKQSKGDFDLFCRKIGWLTKDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLCRELLSHPVWEND-DWK 228 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17690.1 >prot_E-siliculosus-1a_M_contig98.17690.1 ID=prot_E-siliculosus-1a_M_contig98.17690.1|Name=mRNA_E-siliculosus-1a_M_contig98.17690.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=256bp MVSCAVLMAVAGMAMLGSSTTSAFTASPANIRSQHSRAAARSSCDHAASTback to top mRNA from alignment at E-siliculosus-1a_M_contig98:93579..97671- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17690.1 ID=mRNA_E-siliculosus-1a_M_contig98.17690.1|Name=mRNA_E-siliculosus-1a_M_contig98.17690.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4093bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:93579..97671- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:93579..97671- >mRNA_E-siliculosus-1a_M_contig98.17690.1 ID=mRNA_E-siliculosus-1a_M_contig98.17690.1|Name=mRNA_E-siliculosus-1a_M_contig98.17690.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1536bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:93579..97671- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |