mRNA_E-siliculosus-1a_M_contig97.17678.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 267 bits (682), Expect = 7.040e-77 Identity = 160/292 (54.79%), Postives = 193/292 (66.10%), Query Frame = 3 Query: 693 IEQLLAAGADHSIRTITHISPLEILATRGDATILKAFLDTDS-HVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGS--------NGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL 1541 +++LLAAGA++S+RT SPLEI A RG A ++KA LD DS V+ATD G + LH+AA +DGPVRDN DAVR LL AGADV+AK + T ++AV+RR++S TI G D TPLHVAC + GVELLLRWGAD+ L + G TPA V+ + DL DEE+E D+QRIR +LAR PA RSWRRRGWLVLSR CPTRV IAN S NGNS KVA+VSG+ S DDEET D +M D +DLV RL+ LE DG+FRLVV FL Sbjct: 189 VQELLAAGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNS----AKVAKVSGESSSRDDEETADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 265 bits (676), Expect = 1.300e-75 Identity = 154/265 (58.11%), Postives = 176/265 (66.42%), Query Frame = 3 Query: 750 SPLEILATRGDATILKAFLDT-DSHVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGSNGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL 1541 SPLEI A RG A +LKA LD S V+ + G + LH+ A D VRD DAVR LL AGADVN K ++ TP H+AV+R M+S TI D TPLH+AC S VELLLRWGADE L ++DG TPADV+G + DL DEE E D+QRI +LARAPADRSWRRRGWLVLSR CPTRVHIAN SSS S N KVARVSG+ S DDEETED++M D +DLV RLVGLE +GLFRLVV FL Sbjct: 247 SPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE) HSP 1 Score: 234 bits (596), Expect = 3.490e-67 Identity = 140/244 (57.38%), Postives = 164/244 (67.21%), Query Frame = 3 Query: 813 DSHVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGS-NGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL 1541 +S VNAT+ GL+ LH+AA V GPV D DAVR LL AG DVN + + TP HVAVD R++S TI +D TPLH+AC +VSGVELLLRWGADE L ++ G PADV+ GDL DEE + D+QRI +L RAPADRSWRRRGWLVLSR CPTRV I N SS GS NGNS KVA +SG+++ DEETED+IM+D +DLV LVGLE D LFRLVV FL Sbjct: 32 NSDVNATNDLGLAALHYAASVVGPVHDKGDAVRVLLGAGVDVNVNTTTDSCFTPLHVAVDGRIASDGTIRALLEGADVDSRAR-HDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRGSYNGNS----AKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 237 bits (605), Expect = 3.400e-65 Identity = 145/257 (56.42%), Postives = 169/257 (65.76%), Query Frame = 3 Query: 786 TILKAFLDTD-SHVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNG-DCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANR---GSSSGSNGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL 1541 TI+KAFLDTD S VNATD G + LHHAA ++ RD DAVR LL AGADV+AK+ D+ C P H+AV R+ S TI D TPLH AC +V+ VELLLRWGADE L DD TPAD++G GD +IE D QRI +LARAPADRSWRRR WLVLSR CPTRV IAN GSS GS+ +SN K+AR SG++S + ETED++M D + LV RLVGLE DGLFRLVV FL Sbjct: 257 TIVKAFLDTDTSLVNATDHYGYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFL 513
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 224 bits (571), Expect = 7.960e-61 Identity = 130/241 (53.94%), Postives = 159/241 (65.98%), Query Frame = 3 Query: 822 VNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSG-DNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGSNGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL 1541 V+ D G + +H A GP+ DN VR LL+AG VNA++G D TP H AV+RR++SI T + TPLHVACM NV+ VELLLRWGADE +D+G PADV+G GD+ DE+++ DH+RIR +LARAPADRSWRRRGWLVLSR CPTRV IAN+GS N NSC KVARVSG++ D+EE E+++ DW LV L+GLE DGLFRLVV FL Sbjct: 269 VDTGDDQGYTAIHCAVNRHGPL-DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRV----NRNSCPAKVARVSGEDLGGDEEEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE) HSP 1 Score: 226 bits (576), Expect = 6.980e-59 Identity = 159/294 (54.08%), Postives = 192/294 (65.31%), Query Frame = 3 Query: 693 IEQLLAAGADHSIRTI----THISPLEILATRGDATILKAFLDTDSHVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGS-----------NGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLV 1529 +++LLAAGA+ +R + +H S L++ A RG A +L A LD D+ + A VDGPV DN DAVRALL GADVNAK+ D+ +P H+AVDRR++S IXXXXXXXXXXXXXXG D+ PLH+AC +V GVELLLRWGADE L + G TPADV+ + GDL D+E E D QRI ++A PADRSWRRRGWLVLSR CPTRV IAN S NGN+ KVARVSG+ S DDE TE ++ D ++LV RLVGLE DGL RLV Sbjct: 199 VQELLAAGANCGLRCMLTNGSH-SSLDMAAGRGHADVLTALLDKDN------------IFFAMSVDGPVHDNGDAVRALLGVGADVNAKTTDSICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQGDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXXRINGNA----AKVARVSGESSSRDDERTEGDMIVDLRNLVGRLVGLEADGLLRLV 475
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 227 bits (579), Expect = 3.590e-58 Identity = 149/258 (57.75%), Postives = 178/258 (68.99%), Query Frame = 3 Query: 777 GDATILKAFLDTDSHVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNGDC-TPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGSNGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL*G 1547 G ATI+KAFL+T V+ TD +VLH AA +DG V V LL+AGADVNAK+ N TP H+AVDRR+SSI TI XXXXXXXXXXX + TPLHVAC N + V+LLL WGAD + +G PADV+ + L DE IE DH+ +R +LARAPAD+SWRR GWLVLSR PTRV I NRG S G+SNSC K+ARVSGK+S DDE E+++M DW+ L+ RLVGLE DGLFRL+V FL G Sbjct: 230 GHATIVKAFLETGIDVDTTDDQAYTVLHRAADMDGCV------VHVLLEAGADVNAKTDQNSFLYTPLHLAVDRRVSSIRTIRAXXXXXXXXXXXSEDNDTPLHVACTYSNAAVVKLLLCWGADGTCSNGNGHVPADVIRAHDEDGLDDEHIEADHKHVRRMLARAPADKSWRRHGWLVLSRSGPTRVQIGNRGGS----GSSNSCSTKLARVSGKDSSRDDE-LENQMMVDWRVLLDRLVGLEADGLFRLMVGFLCG 476
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.970e-57 Identity = 131/260 (50.38%), Postives = 160/260 (61.54%), Query Frame = 3 Query: 816 SHVNATDCPGLSVLHHAAC-VDGPVRDNSDAVRALLDAGADVNAKSGDNGDC-TPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPA------------DVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSS----GSNGNSNSCCLKVARVSGKESREDDEETEDKIMSDWKDLVRRLVGLEVDGLFRLVVDFL 1541 S V+ATD G + LH C ++ PV DN D VR LL+AGADV+AK+ +G+C TP H AV+RR++ I I +D TPLHVAC +V+GVE LL WGADE L D DG TPA DV G+ DE IE D RIR +LARAPADRSW RR WLVLSR CPT+V I+N SSS GS+G+ S ++ V+ K+ DD+ETED+ +W+DLV RLVGLE D LFRLVV FL Sbjct: 10 SEVHATDDGGYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSGSSGDGLSA--EMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: A0A6H5JB39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB39_9PHAE) HSP 1 Score: 207 bits (527), Expect = 7.630e-56 Identity = 137/203 (67.49%), Postives = 150/203 (73.89%), Query Frame = 3 Query: 816 SHVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSG---DNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEIETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHIANRGSSSGSNGNSNSCCLKVARVS 1415 S V+ATD G + LH AA D PV DN DAVRALL+AGADVN K+ + TP HVAV R M+SICTIXXXXXXXXXXXXXX + TPLHVACM ++SGVELLLRWGADEMLK + TPADV+G GD D DEEIE D+QRIR VLARA ADRSW RR WLVLSR CPTRVHIA R SSS S +S KVARVS Sbjct: 190 SRVDATDNRGWTALHCAAYFDRPVHDNGDAVRALLEAGADVNVKNDAHVSDDIFTPLHVAVSRPMASICTIXXXXXXXXXXXXXXXCNQTPLHVACMWGDLSGVELLLRWGADEMLKKNRVDTPADVIGVWGDEDRNDEEIEADNQRIRPVLARAAADRSWHRRDWLVLSRSCPTRVHIACRSSSSSSGSSS-----KVARVS 387
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 198 bits (503), Expect = 7.580e-54 Identity = 116/214 (54.21%), Postives = 138/214 (64.49%), Query Frame = 3 Query: 711 AGADHSIRTI-THISPLEILATRGDATILKAFLDTDS-HVNATDCPGLSVLHHAACVDGPVRDNSDAVRALLDAGADVNAKSGDNGDCTPPHVAVDRRMSSICTIXXXXXXXXXXXXXXGYDHTPLHVACMCFNVSGVELLLRWGADEMLKDDDGSTPADVMGEMGDGDLTDEEI-ETDHQRIRHVLARAPADRSWRRRGWLVLSRCCPTRVHI 1343 A A++ +RT T SPLEI A G A +LKA LD DS ++ TD G + LH+AA VDGPVRDN DAVR LL AGADVN + ++ TP H+AV+ R S T+ D TPLH+AC +V+GVELLLRWGADE L ++ G TPADV+ D DEE E D+QRIR +L APADRSWRRRGWLVLSR CPTRV I Sbjct: 71 ACANYGLRTEGTRCSPLEIAAHGGHADVLKALLDKDSSQLDDTDGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCPTRVEI 284 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17678.1 >prot_E-siliculosus-1a_M_contig97.17678.1 ID=prot_E-siliculosus-1a_M_contig97.17678.1|Name=mRNA_E-siliculosus-1a_M_contig97.17678.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=339bp MRRSNSRRLLSTLLPPRVMSCASPSSCWGVQTRTSSMLEVKRHCSRQQQTback to top mRNA from alignment at E-siliculosus-1a_M_contig97:613557..616897+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17678.1 ID=mRNA_E-siliculosus-1a_M_contig97.17678.1|Name=mRNA_E-siliculosus-1a_M_contig97.17678.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3341bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:613557..616897+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:613557..616897+ >mRNA_E-siliculosus-1a_M_contig97.17678.1 ID=mRNA_E-siliculosus-1a_M_contig97.17678.1|Name=mRNA_E-siliculosus-1a_M_contig97.17678.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2034bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:613557..616897+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |