mRNA_E-siliculosus-1a_M_contig97.17671.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE) HSP 1 Score: 529 bits (1363), Expect = 2.030e-181 Identity = 264/308 (85.71%), Postives = 281/308 (91.23%), Query Frame = 1 Query: 1 MAMRALVLASTVTAXXXXXXXXXXXXSSAAVNLRPESELTSNCFDFPRSNFDRQRSIMGVFGQSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYDLVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLEGGGDPNAVT-----------RDQHGSLGSASRSSVLPAQGLKR 891
MAM+ALVLAS V+AXXXXXXXXXX SSAAVNLRPESELT NCFDFP +NFDRQRS++G++GQSPKLLLETGSGAIDFTSHDYPAGE WNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPP PPWDKCGYRDEYDLVETYKDRV FVHLYGPEPHPT PATNFDHGVVVNSYWSTV QP+SYEQRLAMVDRVKDL+HP QAIIPDYMPGNPYS+LINPLWCSYG+GARPATAIAQDGTIFYQQEWLHTGDLA+ELDVFLEG GDP+A +DQ+GSL SASRSSVLPAQ L++
Sbjct: 1 MAMKALVLASAVSAXXXXXXXXXX--SSAAVNLRPESELTGNCFDFPSNNFDRQRSMIGMYGQSPKLLLETGSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPSPPWDKCGYRDEYDLVETYKDRVTFVHLYGPEPHPTAPATNFDHGVVVNSYWSTVPQPKSYEQRLAMVDRVKDLVHPEQAIIPDYMPGNPYSDLINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVFLEGRGDPDAAAALGGKVGAGALQDQYGSLDSASRSSVLPAQVLRK 306
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE) HSP 1 Score: 289 bits (740), Expect = 2.150e-85 Identity = 132/236 (55.93%), Postives = 161/236 (68.22%), Query Frame = 1 Query: 85 AAVNLRPESELTSNCFDFPRSNFDRQRSIMGVFG-QSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYDLVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVF 789
A+ LRPES+LTSNCFDFP +NFDR+ SI V G +P L L G A+DFT HD G RWNL E LE G PVV++WGMFTCPAFQG G PPWDKCGYRDEYDLVE Y + FVHLYGPEPHP P TNFD G ++WS Q YE+R+AM R+ +HP+Q I+ DY+PGNPYSELI P+WCSY +GARP T ++ DG +F+Q+ W H+ + +D +
Sbjct: 155 ASAELRPESDLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLK-GRRWNLGETLERTG----LPVVMVWGMFTCPAFQGYGT---YPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVFQQATRYEERVAMAQRIGRRIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAIDEY 382
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI) HSP 1 Score: 286 bits (731), Expect = 4.930e-85 Identity = 130/236 (55.08%), Postives = 159/236 (67.37%), Query Frame = 1 Query: 85 AAVNLRPESELTSNCFDFPRSNFDRQRSIMGVFG-QSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYDLVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVF 789
A LRPE++LTSNCFDFP +NFDR+ SI V G +P L L G A+DFT HD G RWNL E LE G PVV++WGMF CP FQG G PPWDKCGYRDEYDLVE Y + FVHLYGPEPHP P TNFD G ++WS Q SY++R AM R+ L+HP+Q I+ DY+PGNPYSELI P+WCSY +GARP T ++ DG +F+Q+ W H+ + +D +
Sbjct: 125 ANAELRPEADLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLE-GRRWNLGETLERTG----LPVVMVWGMFICPGFQGYGT---YPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVYPQATSYDERAAMAQRINRLIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRAWFHSEHVGRAIDEY 352
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE) HSP 1 Score: 233 bits (593), Expect = 5.440e-67 Identity = 108/235 (45.96%), Postives = 149/235 (63.40%), Query Frame = 1 Query: 94 NLRPESELTSNCFDFPRSNFDRQRSIMGVFGQSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGM-GDQPPIPPWDKCGYRDEYDLVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLE 795
+L PE+EL +NC++FP NF + SI ++G SP L+ + GS A+DFT HD G RWNL E L AGKPVV+I+GM+TCPAFQG+ + W Y E++LVE Y D+ FVH+YGPEPHP P NFD G + WS QP Y+ R+ +++ + HP + ++PDY+ GNPYS L P+WC+Y GARP+ ++ G+IFYQQEW+ T L + +D + E
Sbjct: 26 DLLPETELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLD-GNRWNLGEVLAA---GAGKPVVMIFGMWTCPAFQGLDAAEGSGNTW---AYWHEHNLVEQYGDKAIFVHIYGPEPHPQPPDLNFDSGSFAPNAWSVYRQPVMYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAIDGYWE 253
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA) HSP 1 Score: 222 bits (566), Expect = 6.860e-64 Identity = 113/244 (46.31%), Postives = 142/244 (58.20%), Query Frame = 1 Query: 85 AAVNLRPESELTSNCFDFPRSNFDRQRSIMGVFGQSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYDLVETYKDR---VAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSE-----LINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFL 792
AA LR SELT +C+ FP NF+ I +G SP ++L+ G+ AIDFT +D G W L EHL A +PV LIWGM TCPAF+G+G P+D+C Y DE LV Y VAF HL GPEPHP TP TNFD GVV ++WSTV Q +Y+ R+AM V D +HP A++PD +P PY + P+WCSY GAR A I DG + Q W H GD+A ++ L
Sbjct: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLD-GAAWTLSEHL------ASQPVCLIWGMHTCPAFEGLGT---ASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL 234
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI) HSP 1 Score: 211 bits (536), Expect = 3.900e-59 Identity = 99/219 (45.21%), Postives = 138/219 (63.01%), Query Frame = 1 Query: 142 RSNFDRQRSIMGVFGQSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGD-QPPIPPWDKCGYRDEYDLVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLE 795
+ NF + S+ ++G SP L+ + GS A+DFT HD G RWNL E L G+ GKPVVLI+GM+TCPA+QG+ + W Y DE+ LVE Y D+ FVH+YGPEPHP P NFD G ++WS QP Y+ R+ +++ + HP + ++PDY+ GNPYS L P+WC+Y GARP+ ++ G++FYQQEWL T L + +D + E
Sbjct: 17 QGNFHKGNSVRDIYGTSPHLVRDLGSPAVDFTLHDLD-GNRWNLGEVL--AAGE-GKPVVLIFGMWTCPAYQGLDVIEGSGNTWS---YWDEHTLVEQYGDKAIFVHIYGPEPHPKPPDLNFDAGTFSPNFWSVHRQPVIYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAIDGYWE 228
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A7S2RV85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA) HSP 1 Score: 191 bits (485), Expect = 4.480e-52 Identity = 100/241 (41.49%), Postives = 135/241 (56.02%), Query Frame = 1 Query: 85 AAVNLRPESELTSNCFDFPRSNFDRQRSIMGVF--GQSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYDLVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSEL---INPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFL 792
A L P S+L+S CF P F Q +I V G++ + G A+DFT +D AG L LE KPV LIWGM+TCPAFQG+ P+D+ +E+D+VE YKD V F+HL GPEPHP P NFD G V WSTV QP +Y++RL + ++V + +HP ++ D PGN Y+ NP+WC+ GL +R A + QDGTI + Q W DL+ +D +
Sbjct: 23 ALAELDPASQLSSGCFGLPEKGFGLQSNIAQVDADGEAVWVSRAAGDSAVDFTLYDL-AGNEVTLSTLLED------KPVALIWGMWTCPAFQGLRSD---YPFDQNSRWEEWDVVEKYKDVVTFLHLVGPEPHPLAPDQNFDKGYVWMESWSTVRQPTNYDERLVLANKVAEYVHPDATVLADLYPGNSYAAADVSSNPVWCTMGLHSRSALLVDQDGTITFSQSWFRKDDLSAAIDALV 253
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A7S3K7C6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA) HSP 1 Score: 188 bits (477), Expect = 5.850e-51 Identity = 96/239 (40.17%), Postives = 136/239 (56.90%), Query Frame = 1 Query: 115 LTSNCFDFPRSNFDRQRSIMGVFGQSPKLLLETG---SGAIDFTSHDYPAGERWNLREHLEGVGGD-AGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYDLVETYKDR-VAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSELIN-------PLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLE 795
+ ++CFDFP+ +F + +G SP + + G S + + +G W + +G + +GK VLIWGM+TCPAFQG+G PP+D+C YRDEYDLVETY ++ V F+HL GPEPHP TP NFD G + +YWST+ QP++++ RL + R L+HP + D + P P WC+ GLGAR A I Q GT+ + Q+W DLA+ LD L+
Sbjct: 21 IEADCFDFPKRSFSTTNCVKCTYGASPHIPVSVGDNISPQLQALTLSTASGSSW------KSLGTETSGKISVLIWGMWTCPAFQGLGTG-GSPPFDECSYRDEYDLVETYANKGVRFIHLIGPEPHPITPDVNFDSGKQLMNYWSTIAQPKTWDDRLQVAQRTAALIHPRSLTLVDPLADAPTQHKEGTEGFKNQPTWCTLGLGARTAILIDQHGTVQFTQDWFRKSDLANALDTLLK 252
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: D7FZ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ87_ECTSI) HSP 1 Score: 179 bits (454), Expect = 1.100e-49 Identity = 88/106 (83.02%), Postives = 91/106 (85.85%), Query Frame = 1 Query: 613 QAIIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLEGGGDPNAVT------------RDQHGSLGSASRSSVLPAQGLKRT 894
QA+IPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLEGGGDP+A + QHGSLGSASRSSVLPAQGLKRT
Sbjct: 3 QALIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFLEGGGDPDAAXXXXXXXXXXXXXQHQHGSLGSASRSSVLPAQGLKRT 108
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Match: A0A7S2C362_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.140e-31 Identity = 84/245 (34.29%), Postives = 116/245 (47.35%), Query Frame = 1 Query: 88 AVNLRPESELTSNCFDFPRSNFDRQRSIMGVFGQSPKLLLETGSGAIDFTSHDYPAGERWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDKCGYRDEYD---LVETYKDRVAFVHLYGPEPHPTTPATNFDHGVVVNSYWSTVHQPESYEQRLAMVDRVKDLMHPAQAIIPDYMPGNPYSEL-------INPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVFL 792
A L+ S L CF+FP S+FD SI + P L+ G AIDF + LR+ + KPVV+++GM TCPAFQG+ + K + +YD LV+ Y FV+LY EPHP P NFD G V WST QP +Y R + + +H ++ D + EL NP+WC+YG G+R A I QDG ++ Q W H +A ++ L
Sbjct: 49 AERLQNTSNLIGKCFNFPSSDFDYDNSINAYYPNDPTPLVARGGFAIDFALPSLDDNVYY-LRDLIRT------KPVVMVYGMLTCPAFQGLYLED-----HKESHFSKYDQWALVDKYHKDFHFVNLYSVEPHPMAPDKNFDTGGHVEYAWSTFRQPRTYRDRGYFAQNLAEELHEKSILLVDNLGNEKLPELKENNIPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQGWFHATTMAGAMEEHL 281 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17671.1 >prot_E-siliculosus-1a_M_contig97.17671.1 ID=prot_E-siliculosus-1a_M_contig97.17671.1|Name=mRNA_E-siliculosus-1a_M_contig97.17671.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=299bp MAMRALVLASTVTAAAAAAAAAAADASSAAVNLRPESELTSNCFDFPRSNback to top mRNA from alignment at E-siliculosus-1a_M_contig97:525218..532140+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17671.1 ID=mRNA_E-siliculosus-1a_M_contig97.17671.1|Name=mRNA_E-siliculosus-1a_M_contig97.17671.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6923bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:525218..532140+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:525218..532140+ >mRNA_E-siliculosus-1a_M_contig97.17671.1 ID=mRNA_E-siliculosus-1a_M_contig97.17671.1|Name=mRNA_E-siliculosus-1a_M_contig97.17671.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1794bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:525218..532140+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |