mRNA_E-siliculosus-1a_M_contig97.17657.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 934 bits (2414), Expect = 0.000e+0 Identity = 489/626 (78.12%), Postives = 504/626 (80.51%), Query Frame = 2 Query: 107 MWRWFTYEEEYPAEESKHDPNHV-RRQTGSSSGRLSAKSPHSGSNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFERSVQQALRDHLAGVKYGPDLDKTHHDVTSLADVHDWVQAFYLKTYDGTQLEHPCTPCAIKPPDDVCDSCDFTLVSEVFNDDKVSSAADVVGSEGEPSSGEAVATAWNGRRKIAAASGYSXXXXXXSTMGLSEECVQCLIATNCVGVFLEKCEEVLGLPSSNTTVSSXXXXXEAAAANFSALLEELDLEPSGGVRASGGYVTVENVSYDGNGYAGDRNRVIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWGSFRPEEEMVYSGVASGYPVLLDTGGFNLGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGDDRIRWILGLIFVCMTLAMIRHDTKKWYRARRAKTRRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEDETIVGALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 1981 MWRWFTYEEEYP EESKHDPN+V RQT SSSGRLSAKSPH GSNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAF+RSVQQALRDH+AGVKYGPDLDKTHHDV SL DVHDW+Q IA NC+GVFLEKCEEVLGLPSSNTT SS EA AANFSALLEELDLEPSGGVRASGGYVTVENV+YDGNGYAGDRNR IGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPW SFR EEMVYSGVASGYPVL++TGGFN+GLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQG+DRIRWILGLIFVCMTLAMIRHDTKKWYRAR AK RRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSE+++++ ALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ Sbjct: 1 MWRWFTYEEEYPGEESKHDPNNVLARQTSSSSGRLSAKSPH-GSNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLGDVHDWIQ----------------------------------------------------------------------------------------------------IALNCIGVFLEKCEEVLGLPSSNTTASSSTATSEAVAANFSALLEELDLEPSGGVRASGGYVTVENVNYDGNGYAGDRNRAIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWASFRQSEEMVYSGVASGYPVLIETGGFNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: D7FTQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ5_ECTSI) HSP 1 Score: 536 bits (1380), Expect = 4.160e-175 Identity = 290/360 (80.56%), Postives = 311/360 (86.39%), Query Frame = 2 Query: 107 MWRWFTYEEEYPAEESKHDPNHVRR-QTGSSSGRLSAKSPH--SGSNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFERSVQQALRDHLAGVKYGPDLDKTHHDVTSLADVHDWVQAFYLKTYDGTQLEHPCTPCAIKPPDDVCDSCDFTLVSEVFNDDKVSSAADVVGSEGEPSSGEAVATAWNGRRKIAAASGYSXXXXXX--STMGLSEECVQCLIATNCVGVFLEKCEEVLGLPSSNTTVSSXXXXXEAAAANFSALLEELDLEPSGGVRASGGYVTVENVSYDGNGYAGDRNRVIGGML 1171 MWRWFTYEEEYP EESKHDPN+V QT S+SGRLSA++PH S SN G DSDSDVAPTFD LDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGL+NNARGFRRVGLFLLFSGLYF LVFYGVDV+F+RSVQQALRDH+AGVKYGPDLDKTHHDV SLADVH WVQAF+LKTYDGTQLEHPCTPCAIKPPDDVCD+CDFT + E+F +D SSAAD VGS+GEPS G+ VA AWNGRRK+A XXXXXX ++ G+SEECVQCLIA NCVG L+ C+EVLGLP SNTT XXXXX ANFS LLEELDLEPSGGVRASGGYVTVENV Y GNGY GDRNR IGGML Sbjct: 1 MWRWFTYEEEYPGEESKHDPNNVLALQTSSNSGRLSAQAPHGDSSSNSGIDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLYNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADNVGSQGEPSPGDGVAAAWNGRRKVAXXXXXXXXXXXXXSTSFGISEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXXANFSTLLEELDLEPSGGVRASGGYVTVENVDYSGNGYVGDRNRAIGGML 360
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 520 bits (1339), Expect = 1.130e-170 Identity = 275/305 (90.16%), Postives = 283/305 (92.79%), Query Frame = 2 Query: 2021 MLTFHKRMSIVTDILRRASTHLNHFLFVFFLVILAFAALTWFLVGSSMKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAVLVEAYGGVVSGMHGEDTIFQSFIAFVGMSWCSLKTRIRWATACIRWRLAGRRNTSPQDRPRRPSLKMFLQGSTGVFGVDGRPVLMVRRPPESSTIVGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHEWVFRSDERITGGVFQSPSSSGEYGNGTGRGKGGVTVSSTRRTSRTDSSRPMLRRPSSSTASR 2935 MLTFHKRMSIVTD L RASTHLNHFLFVFFLVILAFAALTW LVGSS KEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIA+L+EAY GV SGMHGEDTIFQSFIAFVGMSWCSL TRIRWATACIRWRL GRRNTS RPSLK+FLQGSTGV GVDGRPV+MVRRPPESSTI+GRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVH+WVFRSDERITGG FQSPSSSGEYGNGTG G GGVT ++ RRTS TDSSRPM RRPSSSTASR Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSSSTASR 299
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: A0A6H5L8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A4_9PHAE) HSP 1 Score: 350 bits (897), Expect = 2.320e-107 Identity = 186/227 (81.94%), Postives = 200/227 (88.11%), Query Frame = 2 Query: 242 GTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFERSVQQALRDHLAGVKYGPDLDKTHHDVTSLADVHDWVQAFYLKTYDGTQLEHPCTPCAIKPPDDVCDSCDFTLVSEVFNDDKVSSAADVVGSEGEPSSGEAVATAWNGRRKIAAASGYSXXXXXXS-TMGLSEECVQCLIA 919 GT+SDSDVAPT+D LDPSVTAAILAQAAFRGYRLRERLRRLPAREAEK ILGLH+NARGFRRVGLFLLFSGLYF LVFYGVDVAF+RSVQQALRDH+AGVKYGPDLDKTHHDV SLADVH WVQAF+LKTYDGTQLEHPCTPCAIKPPDDVCD+CDFT + E+F +D SSAAD VGS+G+ SSGEAVA AWN XXXXXX TMGLSEECVQCL++ Sbjct: 6 GTESDSDVAPTYDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKQILGLHSNARGFRRVGLFLLFSGLYFALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLIEMFANDSDSSAADDVGSKGKSSSGEAVAAAWNAXXXXXXXXXXXXXXXXXXXTMGLSEECVQCLVS 232
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: A0A6H5KUB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUB6_9PHAE) HSP 1 Score: 281 bits (719), Expect = 1.000e-83 Identity = 145/173 (83.82%), Postives = 153/173 (88.44%), Query Frame = 2 Query: 107 MWRWFTYEEEYPAEESKHDPNHV--RRQTGSSSGRLSAKSPHSGS--NGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFERSVQQALRDHLAGVKYGPDLDKTHHDVTSLADVHDWVQ 613 MWRWFTYEEEYP EESKHDPNHV R+ + S+ GRLSA++PH GS N DVAPTFD LDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYF LVFYGVDV+F+RSVQQALRDH+AGVKYGPDLDKTHHDV SLADVH WVQ Sbjct: 1 MWRWFTYEEEYPGEESKHDPNHVLVRQTSTSTGGRLSAQAPHGGSSSNXXXXXXXDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ 173
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 268 bits (686), Expect = 1.100e-78 Identity = 155/218 (71.10%), Postives = 161/218 (73.85%), Query Frame = 2 Query: 2342 VEAYGGVVSGMHGEDTIFQSFIAFVGMSW--------------------CSLKTRIRWATACIRWRLAGRRNTSPQDRPRRPSLKMFLQGSTGVFGVDGRPVLMVRRPPESSTIVGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHEWVFRSDERITGGVFQSPSSSGEYGNGTGRGKGGVTVSSTRRTSRTDSSRPMLRRPSSSTASR 2935 V+AY GVVSGM GEDTI SFIAFVGMSW C LKT IRWATA IRWRLAGRRNT PQD PRRPSL+MFLQGSTGV GVDGRPV+MVR PESSTI+GRQL ALIEA PVPARVA RLVRKIVHEWVFRSDERITGGV QSPSSSGEYG+GTG G GGVTV STRRT TDSSRPMLRR SS + SR Sbjct: 12 VKAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQLP------------AALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSRPMLRRWSSFSPSR 217
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 226 bits (576), Expect = 6.620e-65 Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 2 Query: 2021 MLTFHKRMSIVTDILRRASTHLNHFLFVFFLVILAFAALTWFLVGSSMKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAVLVEAYGGVVSGMHGEDTIFQSFIAFVGMSW 2428 MLTFHKRMSIVTD L RASTHL+HFLFVFFLVILAFAALTW LVGSS KEFSTL +AW SV RISLGESENFYPQILDAQPTVGPV VVLYQVLGVVLLLNVVIA+ +EAY GVVSGM GEDTIFQSFIAFVGMSW Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMSW 136
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 211 bits (538), Expect = 1.640e-59 Identity = 124/191 (64.92%), Postives = 134/191 (70.16%), Query Frame = 2 Query: 1781 MWLGWASLGKVIAFDVVLQGTSSEDETIVGALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQARDRSKNTTKKKFMLTFHKRMSIVTDILRRASTHLNHFLFVFFLVILAFAALTWFLVGSSMKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAVLVEAY 2353 MWLGWASLGKVIA DVVLQGTSSE+++++ A MLTFHKRMSIVTD L RASTHL+HFLFVFFLVILAFAALTW LVGSS KEFSTLEDAW+SV RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIA+L+E + Sbjct: 1 MWLGWASLGKVIANDVVLQGTSSEEDSVLDA-------------------------------------------------MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: A0A6H5JJW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW1_9PHAE) HSP 1 Score: 196 bits (498), Expect = 5.670e-54 Identity = 112/162 (69.14%), Postives = 119/162 (73.46%), Query Frame = 2 Query: 107 MWRWFTYEEEYPAEESKHDPNHV--RRQTGSSSGRLSAKSPHSGSNGGTDSDSDVAPTFDNLDPSVTAAI------------LAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFERSVQQALRDHLAGVKYG 550 MWRWFTYEEEYP ESKHD NHV R+ + SS GRLSAKSPHSGSN GT+ DSDVAPT D +T + AAFRGY LRERLRRLPARE EKHILGLHNNA GFRRVGLFLLFSGLYFTLVFY VAF+ SVQQALRDH+A V G Sbjct: 1 MWRWFTYEEEYPGAESKHDSNHVVARQPSSSSRGRLSAKSPHSGSNDGTEGDSDVAPTLDTWIHLLTGGMGDYVRQSSGGPAALVAAFRGYHLRERLRRLPAREVEKHILGLHNNASGFRRVGLFLLFSGLYFTLVFY---VAFQPSVQQALRDHVAAVSLG 159
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 182 bits (462), Expect = 2.760e-49 Identity = 110/173 (63.58%), Postives = 118/173 (68.21%), Query Frame = 2 Query: 1817 AFDVVLQGTSSEDETIVGALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQARDRSKNTTKKKFMLTFHKRMSIVTDILRRASTHLNHFLFVFFL--------------------------VILAFAALTWFLVGSSMKEFSTLEDAWRSVIRISLGESENFYPQILDA 2257 AFDVVLQ TSSE ++++GALTG ILALQEA LFSWSL+IIFLLTTLAGLY WIFQ M TFHKRMSIV D L RASTHL FLFVFFL V+LAFAALT+ LVGSS KE STLEDAWRSVIRIS GES+N YPQILDA Sbjct: 2 AFDVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQ-------------MFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17657.1 >prot_E-siliculosus-1a_M_contig97.17657.1 ID=prot_E-siliculosus-1a_M_contig97.17657.1|Name=mRNA_E-siliculosus-1a_M_contig97.17657.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=944bp MWRWFTYEEEYPAEESKHDPNHVRRQTGSSSGRLSAKSPHSGSNGGTDSDback to top mRNA from alignment at E-siliculosus-1a_M_contig97:312317..332932+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17657.1 ID=mRNA_E-siliculosus-1a_M_contig97.17657.1|Name=mRNA_E-siliculosus-1a_M_contig97.17657.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=20616bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:312317..332932+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:312317..332932+ >mRNA_E-siliculosus-1a_M_contig97.17657.1 ID=mRNA_E-siliculosus-1a_M_contig97.17657.1|Name=mRNA_E-siliculosus-1a_M_contig97.17657.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5664bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:312317..332932+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |