mRNA_E-siliculosus-1a_M_contig97.17648.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17648.1 vs. uniprot
Match: A0A6H5KT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT89_9PHAE) HSP 1 Score: 966 bits (2496), Expect = 0.000e+0 Identity = 584/618 (94.50%), Postives = 597/618 (96.60%), Query Frame = 1 Query: 1 MRCLSAAIMLLAVADQADGFYCAPSRIGGRASRCTAVSSSRKASSSTWSTRPATPSQGRSRSGYVLQASSTEPRDKDAPEGDRAGAEKKKGGEGEGAEDAVLATPAESRTALLSKRVAEEGKTANKRAKRMANLSSQLKRSFAKKEEVETMIAEEVAQLGTKLRQERDIEIARAADLKELLKEFDETIVEKQAEIEKEQDLLAQMQA--LRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGEIMNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLMDSVQQKKEVLGEVSKAELVEGGGRG---ARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAVANSEISNPVKDALDSLEQFIVSLAALGSKYFTVSRAARFQLPGGSKETDEQRKANAKLPSLSPPPKPMDELVAQKSXXXXXXXXXXXXXXXXXX-ESSPAPAXXXXVPPVAKPAAEE 1836
MRCLSAAIMLLAVADQADGFYCAP +IGGRASRC+AVSSSRKASSSTWSTRP TPSQGRSRSGYVLQASSTEPRDKDAPEGD+ GAEKKKGGEG GAEDA LATPAESRTALLSKRVAEEGKTAN+RAKRMANLSSQLKRSFAKKEEVETMI EEVAQLGTKLRQERDIEIAR ADLKELLKEFDETIVEKQAEIEKEQDLLAQMQA LRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSAR E MNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRL+DSVQQKKEVLGEVSKAELV GGGRG A+KMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAA+SVANAFKAAKKEFDENA+SGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAV NSEISNPVKDALDSLE+F+VSLAALG+KYFTVSRAARFQLPGG+KET+EQRKANAKLPSLSPPPKPMDELVAQK XXXXXXXXXXXXXXXXXX ESSPAP XXXX PPVAKPA EE
Sbjct: 16 MRCLSAAIMLLAVADQADGFYCAPGQIGGRASRCSAVSSSRKASSSTWSTRPTTPSQGRSRSGYVLQASSTEPRDKDAPEGDKVGAEKKKGGEGGGAEDAALATPAESRTALLSKRVAEEGKTANQRAKRMANLSSQLKRSFAKKEEVETMITEEVAQLGTKLRQERDIEIARGADLKELLKEFDETIVEKQAEIEKEQDLLAQMQASALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARAETMNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLLDSVQQKKEVLGEVSKAELVAGGGRGGRGAKKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAAASVANAFKAAKKEFDENAVSGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAVTNSEISNPVKDALDSLEEFVVSLAALGTKYFTVSRAARFQLPGGTKETEEQRKANAKLPSLSPPPKPMDELVAQKXXXXXXXXXXXXXXXXXXXXESSPAPXXXXXAPPVAKPADEE 633
BLAST of mRNA_E-siliculosus-1a_M_contig97.17648.1 vs. uniprot
Match: D7FTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP6_ECTSI) HSP 1 Score: 649 bits (1675), Expect = 1.720e-222 Identity = 503/560 (89.82%), Postives = 508/560 (90.71%), Query Frame = 1 Query: 613 MQALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGEIMNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLMDSVQQKKEVLGEVSKAELVEGGGRGARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAVANSEISNPVKDALDSLEQFIVSLAALGSKYFTVSRAARFQLPGGSKETDEQRKANAKLPSLSPPPKPMDELVAQKSXXXXXXXXXXXXXXXXXXESSPAPAXXXXVPPVAKPAAEEXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTPPAPEVXXXXXXXXXXXXXXXXXEEKKPAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDGAAPATPPSAPVGAGEKAPQ 2292
MQALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARG+ MNGVVAALPAEGDIARLRAYNWQDVQDLQ VLVSSAESMEASDAQVGLLRT+LMDSVQQKKEVLGEVSKAELVEGGGRGARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKA+LREAGDLLTKQVPQASARVGAGTAEAIKGA ANSEISNPVKDALDSLEQF+VSLAALG+KYFTVSRAARFQLPGGSKETDEQRKANAKLPSLSPPPKPMDELVAQK XXXXXXXXXXXXXXXX ESSP PA VPPVAK X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STPPAPEV XXXXXXXX E XXXXXXXXXXXXXXXXXX VLDGAAPATPPSA VGAGEKAPQ
Sbjct: 1 MQALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGDTMNGVVAALPAEGDIARLRAYNWQDVQDLQGVLVSSAESMEASDAQVGLLRTQLMDSVQQKKEVLGEVSKAELVEGGGRGARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAQLREAGDLLTKQVPQASARVGAGTAEAIKGAAANSEISNPVKDALDSLEQFVVSLAALGTKYFTVSRAARFQLPGGSKETDEQRKANAKLPSLSPPPKPMDELVAQKXXXXXXXXXXXXXXXXXR-ESSPVPAAGASVPPVAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTPPAPEVSAQKXXXXXXXXKPVVEEXXX---XXXXXXXXXXXXXXXXXXXAVVAADKPAAEKSAASPVLDGAAPATPPSAAVGAGEKAPQ 556
BLAST of mRNA_E-siliculosus-1a_M_contig97.17648.1 vs. uniprot
Match: A0A835Z020_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z020_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.060e-55 Identity = 133/332 (40.06%), Postives = 203/332 (61.14%), Query Frame = 1 Query: 613 MQALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGEIMNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLMDSVQQKKEVLGEVSKAELV-----------EGGGRGARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAVANSEISNPVKDALDSLEQFIVSLAALGSK 1575
MQ ++ QV E +IRA + AMAKKAD+ SIEV+LLED+ +C+E+L EL ST R + ++GVVAALP D +R R Y+W+D+Q LQ++L+ S +SM SD +V LRT+ D+V+QK+EVLGE+ V EG +G+ + + + LS++EL A +SSK+ A+ + K+V+ G SLGDYL+SP Q +AA+ V + G ++ +F A K F +N + GEE+TSFD + K+ + ++K+VQ S V A L + + VP + ++G EAIK A N E+ + +AL +++ +V+LA LG+K
Sbjct: 1 MQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQK-GQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTK 331
BLAST of mRNA_E-siliculosus-1a_M_contig97.17648.1 vs. uniprot
Match: A0A6U1MNE3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MNE3_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.080e-26 Identity = 115/451 (25.50%), Postives = 237/451 (52.55%), Query Frame = 1 Query: 379 RAKRMANLSSQLKRSFAKKEEVETMIAEEVAQLGTKLRQERDIEIARAADLKELLKEFDETIVEKQAEIEKEQDLLAQMQALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGEIMNGVVAALPAEG-DIARL-RAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLMDSVQQKKEVLGEVSKAELVEGGGRGA---RKMTTARAFQAST----------------ELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAG------TAEAIKGAVANSEISNPVKDALDSLEQFIVSLAALGSKYFTVSRAARFQLPGGSKETDEQRKA 1650
R +R+ +S L +S KK+++E +A EV + ++ ++ + +K LL + D + K+A+++KE++LL M+ ++ ++++A++R +E A++ KA++ +IE+++ ++L C +L ++ T R ++M + +LP +G D+ L R Y+W++VQ+LQE+L+ S E+ + + ++ ++ + ++++Q++ VL V EL+ GGR A K RA Q +++E ++L +S + A ++V A S G +++S GQD A + V + + G +SV + + F+ N++ G+++T+F I S ++ ++ +S E++E+ + + V QA VG T +AI G +A EI + + S ++ +++LAA G+K + LP + Q+K+
Sbjct: 39 RMRRIDGMSQSLGKSLMKKQQIEETLAVEVEGIRQEMAYMLKEDLRDSEQMKVLLADLDLALTSKKAQVKKEENLLLNMEEVKERIEDAALRELMECAISAKANLVAIEMVVAQELETCIVQLRANIQDTRERCDLMKVALDSLPGQGQDLQALARQYSWEEVQELQELLLDSIEACQERNFKINNIKLKFAEALRQRQSVLEGV---ELLNAGGRAALYPSKEQQRRAQQVGAMAEVMKAASVKLTITRDMTEVDMLNVAKDSLVDFATNSTQAVGAIVISTGQWVQSEQGQDAAGAVVNAVTGVTGFFASVKDVVVTVVETFNNNSVKGDDMTNFKIIANSFINATASIPKSK----EVQESVNNMNANVKQA---VGGTSDFLQLTGDAIAGGMATPEIYKALVCSSVSAQKLLIALAATGAKLVKADKL----LPPAKADAPPQQKS 475 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17648.1 >prot_E-siliculosus-1a_M_contig97.17648.1 ID=prot_E-siliculosus-1a_M_contig97.17648.1|Name=mRNA_E-siliculosus-1a_M_contig97.17648.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=765bp MRCLSAAIMLLAVADQADGFYCAPSRIGGRASRCTAVSSSRKASSSTWSTback to top mRNA from alignment at E-siliculosus-1a_M_contig97:213258..225795- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17648.1 ID=mRNA_E-siliculosus-1a_M_contig97.17648.1|Name=mRNA_E-siliculosus-1a_M_contig97.17648.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12538bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:213258..225795- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:213258..225795- >mRNA_E-siliculosus-1a_M_contig97.17648.1 ID=mRNA_E-siliculosus-1a_M_contig97.17648.1|Name=mRNA_E-siliculosus-1a_M_contig97.17648.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4590bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:213258..225795- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |