mRNA_E-siliculosus-1a_M_contig966.17630.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: D1J708_ECTSI (Uncharacterized protein ycf40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J708_ECTSI) HSP 1 Score: 100 bits (248), Expect = 1.350e-26 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 Query: 7 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG Sbjct: 28 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A5B9RD79_9PHAE (Ycf40 protein n=14 Tax=Laminariales TaxID=2886 RepID=A0A5B9RD79_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.840e-19 Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 DLLEFFNHQKELVII++NGKI+N L QYLREKDKIEIITIVGGG Sbjct: 29 DLLEFFNHQKELVIIQHNGKIHNYLNKNSQYLREKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A8F0JZ90_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZ90_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.840e-19 Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 DLLEFFN+QKEL+IIE+NGKI+N L PQYLR+KDKIEIITIVGGG Sbjct: 29 DLLEFFNYQKELIIIEHNGKIHNYLNKTPQYLRQKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A1I9LW05_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW05_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 8.140e-19 Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 DLL+FFN+QKEL+IIEYNGKIYNN +R QYL++KD IEIITIVGGG Sbjct: 29 DLLKFFNYQKELIIIEYNGKIYNNSITRTQYLKQKDIIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A0S0GBR2_COSCS (Uncharacterized protein n=4 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBR2_COSCS) HSP 1 Score: 79.7 bits (195), Expect = 1.640e-18 Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 DL+EFFNHQK+LVIIE+NGKI N L PQY+R+KDKIE+ITIVGGG Sbjct: 29 DLIEFFNHQKDLVIIEHNGKIQNYLNKTPQYVRQKDKIEVITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A516ICZ3_9PHAE (Uncharacterized protein n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICZ3_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 6.690e-18 Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 DLLEFFN+QKELVII++NGKI+N L QYLREKDKIEIITIVGGG Sbjct: 29 DLLEFFNYQKELVIIQHNGKIHNYLNKNFQYLREKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A7T8JJY9_SCYLO (Ycf40 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JJY9_SCYLO) HSP 1 Score: 77.8 bits (190), Expect = 1.080e-17 Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLA--SRPQYLREKDKIEIITIVGGG 150 DLLEFFN+QKELVIIEYNGKIYNNL +R YL++KD IEIITIVGGG Sbjct: 32 DLLEFFNYQKELVIIEYNGKIYNNLELHNRLSYLKKKDNIEIITIVGGG 80
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A0R6LV33_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6LV33_UNDPI) HSP 1 Score: 77.4 bits (189), Expect = 1.350e-17 Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 1 Query: 7 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 SD+LEFFN+QKELVII++NGKI+N+L QY+++KDK+EIITIVGGG Sbjct: 28 SDILEFFNYQKELVIIQHNGKIHNDLNKNSQYVKQKDKVEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A8F0JZ63_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ63_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.920e-17 Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 D+LEFFNH+++L+IIE NGKI N L ++PQY ++KDKIEIITIVGGG Sbjct: 29 DILEFFNHERQLIIIEQNGKIQNKLNNKPQYFKDKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A8E8PDZ4_9PHAE (ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ4_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.920e-17 Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 1 Query: 10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150 DLLEFFNHQKELVII++NGKI+N+L +Y+++KDKIE+ITIVGGG Sbjct: 29 DLLEFFNHQKELVIIQHNGKIHNDLNKTQKYVKQKDKIEVITIVGGG 75 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig966.17630.1 >prot_E-siliculosus-1a_M_contig966.17630.1 ID=prot_E-siliculosus-1a_M_contig966.17630.1|Name=mRNA_E-siliculosus-1a_M_contig966.17630.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=51bp MSSDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGGback to top mRNA from alignment at E-siliculosus-1a_M_contig966:1444..1596+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig966.17630.1 ID=mRNA_E-siliculosus-1a_M_contig966.17630.1|Name=mRNA_E-siliculosus-1a_M_contig966.17630.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=153bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig966:1444..1596+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig966:1444..1596+ >mRNA_E-siliculosus-1a_M_contig966.17630.1 ID=mRNA_E-siliculosus-1a_M_contig966.17630.1|Name=mRNA_E-siliculosus-1a_M_contig966.17630.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig966:1444..1596+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |