mRNA_E-siliculosus-1a_M_contig96.17621.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Match: B5LWH5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC) HSP 1 Score: 81.3 bits (199), Expect = 1.620e-16 Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 1 Query: 1 VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQGAHVELSTLVTVDGERSMQPV-IKSSPTSTTFSSLRGGLVANLTIDGSISWDRDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTL--QYTPKFEISSD 450
++CG +VH + G+ +S F YD++S + EVSR+ ++ +S S +MQPV I +S S SS L LT+DG ISWD +CLYL A+K FRF++ ES+GV+PS L+LE L Y PK E +S+
Sbjct: 20 MSCGDVVHGEVVNI--GDLVCSS-FSYDEESGEAREVSRDDVIVDSSSGSVSFRSSVR---SKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17621.1 >prot_E-siliculosus-1a_M_contig96.17621.1 ID=prot_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=151bp VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQGback to top mRNA from alignment at E-siliculosus-1a_M_contig96:571000..571452+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=453bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:571000..571452+ >mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |