mRNA_E-siliculosus-1a_M_contig96.17611.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Match: A0A6H5KYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD8_9PHAE) HSP 1 Score: 1672 bits (4331), Expect = 0.000e+0 Identity = 1195/1523 (78.46%), Postives = 1215/1523 (79.78%), Query Frame = 2 Query: 356 GGGRLDMADVERPTRRRGKMGGAARALALGLTIGGWASSQGLTAAASDLPAAVAAAGGLQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLDFGCVDGRDKLVVSLYDNLMRPLATCEVGETASIESSKAMVCEGAHGMHFKYTVEHTALLAEPIRPQRRAQLVTPTATPAPAAVGTTPAXXXPEXXXXXXXXXXXXXXXXXXX--------------APETPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPAPVTAXXXXXXXXXXTPAPVAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGTTDSXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVT----ETXXXXXXXXXXXEPAPAXXXXXXXXXXXXPVASPPPVDFPSSSPSTXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------VVSTETVAPGAGAAVTTPXXXXXXXXXXXXXXXSAAEGETPAPFSSPAPVATSSSSAEATLSPNTEEVCTEACVLDNLTPSSFSATYYDARCEGKDDSDLSGCNLSSTNSEWNNCRNCIINLESFEAENGVGSVEWPLCPCCVAETLLMDPQTDECIAEAGTAVTTPTPTMVGETTLNLRTEANDPDLLMMSFNSEDCTAFGIAVIPGTTPKVMEISRYTDADGLCNSNFDMLVGTECDLESYSWDYSSSSFEYMYTCSTTTSAGRRRLADGGSEEYPIESDAVLCNNGDHFVSLSSLDGGETGLVYATPDAENYDSVTDSQTALSGSDMCGESTDANVVTTLLLEEIEEDDGLSGLLGEADESSSEGDGLGYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSREGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXXXARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXXXXRGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXIEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 4423
GGGR MADVERPTRRRGKMGGA RALALGLTIGGWASSQGLTAAASDLPAA AA G QECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSV KEAGLGPVREAGS WRQVLDFGCVDGRDKLVV+LYDNLMRPLATCEVGETASIESSKAM CEGAHGMHFKY VEHTALLAEPIRPQRRAQ VT TATP PAAV T XXX XXXXXXXXXXXXXXXXXXX APE PATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T +PVT XXX TPAPVAAVVXXXXXXXXXXXXXXX TVGTTD XXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVT ET XXXXXXXX PA A PVASPPPVDF SSSPST XXX X X VVSTETVAPGAGAAVT XXXXXXXXXXXXXXXSAA GE PAPFSSPAPVAT SS AEATLSPNTEEVCT ACV DN+T S FSATYYDARCEGKDDSDLSGCNLSS NSEWNNCR CII+LESFEAENG GSV+WPLCPCCVAETL MDPQTDECIAEAGTAVTTP PTM G+TTL L TEANDPDLLMMSFNS+DCTAFGIAVIPGT PKVME++ YTDA+GLCNSNFD LVGTEC+LESYSWDYS SSFEYMYTCST+TSAGRRRLADGGSE YP ESDAVLCNNG HFVSLSS DGGETGLVYATPDAENYDSVT+SQTALSGSDMCG STDANVVTT+LLE+IEE+ GLSGLL EADESSSEGDGLGYEIIIGIVC VVLLMGCACFCCYRHRKGKESR VHMRRNLG+TPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWK+RK HKDLTKPVPQQHVIGGSPNSEELKAE+SREGS ANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEE XXXXXXXARSAATGMSGPSKYAPS XXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXX ESSSYSYNDGAG XXXXXXX RH+SGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXX EGGSRSYDDEDDESAVGRTAVSMDDLEYYSED NAGGMTSGRGAPLTDLEETHGGQRW
Sbjct: 3 GGGRRAMADVERPTRRRGKMGGAGRALALGLTIGGWASSQGLTAAASDLPAAAAA--GSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVRKEAGLGPVREAGSPVWRQVLDFGCVDGRDKLVVTLYDNLMRPLATCEVGETASIESSKAMGCEGAHGMHFKYAVEHTALLAEPIRPQRRAQSVTSTATPTPAAVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPEMPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI---TESPVTPGXXXP-----TPAPVAAVVXXXXXXXXXXXXXXXPQAPVAAPSLEPTVGTTDXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTARVTETPVVXXXXXXXXGPAGAVTAS--------PVASPPPVDFLSSSPSTPXXXVPPSSXSDPPTGLAAPPTERPXXXXXXXXXXTPEPPTDSPVLPPFPVPSTPRPTTSPPTAVTXMXXAXTXXXXXXXXXXXXXXXXXSTTSPSTPQXXAARPNAAAFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMNPLPREAPSSSPTRSXSSXXXXXXXXXXXXXXSPVVSTETVAPGAGAAVTXXXXXXXXXXXXXXXXXSAAAGEAPAPFSSPAPVATPSSPAEATLSPNTEEVCTTACVEDNVTVSYFSATYYDARCEGKDDSDLSGCNLSSANSEWNNCRYCIIDLESFEAENGEGSVDWPLCPCCVAETLGMDPQTDECIAEAGTAVTTPAPTMFGQTTLELTTEANDPDLLMMSFNSDDCTAFGIAVIPGTPPKVMEVAGYTDANGLCNSNFDKLVGTECELESYSWDYSDSSFEYMYTCSTSTSAGRRRLADGGSEAYPFESDAVLCNNGAHFVSLSSFDGGETGLVYATPDAENYDSVTNSQTALSGSDMCGASTDANVVTTMLLEQIEEE-GLSGLLEEADESSSEGDGLGYEIIIGIVCVVVLLMGCACFCCYRHRKGKESRGVHMRRNLGFTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKERKAHKDLTKPVPQQHVIGGSPNSEELKAEDSREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEE--GEXXXXXXXARSAATGMSGPSKYAPSGXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXXESSSYSYNDGAGXXXXXXXXXXXXXXX----RHVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDHNAGGMTSGRGAPLTDLEETHGGQRW 1500
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Match: D8LQ66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ66_ECTSI) HSP 1 Score: 1346 bits (3484), Expect = 0.000e+0 Identity = 1029/1188 (86.62%), Postives = 1038/1188 (87.37%), Query Frame = 2 Query: 875 MHFKYTVEHTALLAEPIRPQRRAQLVTPTATPAPAAVGTTPAXXXPEXXXXXXXXXXXXXXXXXXXAPETPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPAPVTAXXXXXXXXXXTPAPVAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGTTDSXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXEPAPAXXXXXXXXXXXXPVASPPPVDFPSSSPSTXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTETVAPGAGAAVTTPXXXXXXXXXXXXXXXSAAEGETPAPFSSPAPVATSSS----SAEATLSPNTEEVCTEACVLDNLTPSSFSATYYDARCEGKDDSDLSGCNLSSTNSEWNNCRNCIINLESFEAENGVGSVEWPLCPCCVAETLLMDPQTDECIAEAGTAVTTPTPTMVGETTLNLRTEANDPDLLMMSFNSEDCTAFGIAVIPGTTPKVMEISRYTDADGLCNSNFDMLVGTECDLESYSWDYSSSSFEYMYTCSTTTSAGRRRLADGGSEEYPIESDAVLCNNGDHFVSLSSLDGGETGLVYATPDAENYDSVTDSQTALSGSDMCGESTDANVVTTLLLEEIEEDDGLSGLLGEADESSSEGDGLGYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSREGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXXXARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXXXXRGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXG-YSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXIEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 4423
MHFKY VEHTALLAE IRPQRRAQLVTPTATP PAAVGTT XXX XXXXXXXXXXXXXXXXXX APETPATEAPEPEPTEPPTAEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T APV XXXXXXXXXX PVAAVVXXXXXXXXXXXXXXXX XXX XXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXX XXXXXXXXXXXX DFPSSSPST XXXXXXXXXXXXXXXXXXXXXX GAAVTTP XXXXXXXXXXXX S EATLSPNTEEVCTEACV+DNLT S+ SATYYDARCEGKDDSDLSGCNLSS NS+WNNCRNCIINLESFEAENG EAGTAVTTPTPTMVGETTL+LRTEANDPDLLMMSFNSEDCTAFGIAVIPG TPKVMEISRYTDADGLCNSNFD+LVGTECDLESYSW YSS+SF+YMYTCSTTTSAGRRRLADGGSE YPIESDAVLCNNGDHFVSLSSL GETGLVYATPDAENYDSVTDSQT+LSGSDMCGESTDANVVTT+LLEEIEEDDGLSGLLGEADESSSEG GL YEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENS EGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXX ARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXX RGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXX YSRHNAHRSGRQ XXXXXXXXXXXXX EGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW
Sbjct: 1 MHFKYAVEHTALLAEAIRPQRRAQLVTPTATPTPAAVGTTXXXXXXXXXXXXXXXXXXXXXXXXXPAPETPATEAPEPEPTEPPTAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TAAPVXXXXXXXXXXXXXXXPVAAVVXXXXXXXXXXXXXXXXQAPVAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XDFPSSSPSTPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XGAAVTTPAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEATLSPNTEEVCTEACVVDNLTLSTHSATYYDARCEGKDDSDLSGCNLSSANSDWNNCRNCIINLESFEAENG----------------------------EAGTAVTTPTPTMVGETTLDLRTEANDPDLLMMSFNSEDCTAFGIAVIPGATPKVMEISRYTDADGLCNSNFDILVGTECDLESYSWAYSSNSFDYMYTCSTTTSAGRRRLADGGSETYPIESDAVLCNNGDHFVSLSSLADGETGLVYATPDAENYDSVTDSQTSLSGSDMCGESTDANVVTTMLLEEIEEDDGLSGLLGEADESSSEGGGLRYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSHEGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXX-ARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXX--RGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXXXYSRHNAHRSGRQPVASGRSGFGAXXXXXXXXXXXXXSGFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 1150
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Match: D8LQ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ65_ECTSI) HSP 1 Score: 279 bits (714), Expect = 3.100e-83 Identity = 143/149 (95.97%), Postives = 144/149 (96.64%), Query Frame = 2 Query: 374 MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLTAAASDLPAAVAAAGGLQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLDFGCVDGRDKLVVSLYDNLMRPLATCEVG 820
MADVERPTRRRGKMGGAARALALGLTIGGWASSQGL AAAS LPAA AAA G QECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVL+FGCVDGRDKLVVSLYDNLMRPLATCEVG
Sbjct: 1 MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLAAAASHLPAAAAAAAGSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLNFGCVDGRDKLVVSLYDNLMRPLATCEVG 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17611.1 >prot_E-siliculosus-1a_M_contig96.17611.1 ID=prot_E-siliculosus-1a_M_contig96.17611.1|Name=mRNA_E-siliculosus-1a_M_contig96.17611.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1351bp MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLTAAASDLPAAVAAAback to top mRNA from alignment at E-siliculosus-1a_M_contig96:504776..520308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17611.1 ID=mRNA_E-siliculosus-1a_M_contig96.17611.1|Name=mRNA_E-siliculosus-1a_M_contig96.17611.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=15533bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:504776..520308- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:504776..520308- >mRNA_E-siliculosus-1a_M_contig96.17611.1 ID=mRNA_E-siliculosus-1a_M_contig96.17611.1|Name=mRNA_E-siliculosus-1a_M_contig96.17611.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=8106bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:504776..520308- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |