mRNA_E-siliculosus-1a_M_contig96.17609.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17609.1 vs. uniprot
Match: D8LQ68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ68_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 1.780e-133 Identity = 223/230 (96.96%), Postives = 224/230 (97.39%), Query Frame = 1 Query: 1 AESRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRMGVSFAGELFADSRLRASSGSYRAPRYDACATTQREGEQIRAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDSDGGVTDKRI 690
AE RASSATGGVGAGD ARGSESSSSRRESPFLAAGVP VPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSR+GVSFAGELFADSRLRASSGSYRAPRYDACAT QREGEQ RAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDS GGVTDKRI
Sbjct: 978 AERRASSATGGVGAGDWARGSESSSSRRESPFLAAGVPRVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRIGVSFAGELFADSRLRASSGSYRAPRYDACATPQREGEQTRAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDSGGGVTDKRI 1207
BLAST of mRNA_E-siliculosus-1a_M_contig96.17609.1 vs. uniprot
Match: A0A6H5L0S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S8_9PHAE) HSP 1 Score: 389 bits (998), Expect = 3.950e-123 Identity = 212/230 (92.17%), Postives = 215/230 (93.48%), Query Frame = 1 Query: 1 AESRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRMGVSFAGELFADSRLRASSGSYRAPRYDACATTQREGEQIRAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDSDGGVTDKRI 690
AE RASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSR+GVSFAGELFADSRLRASSGS RAPRYDAC QR GEQIRAG +C ALPLP AQQQ VSSQRQRRSWSAPTLFSEWSKKH EADRVVAPGG QKEN LGLGGVPPDVVGAWLALAIEGIYSHNDS GGVTD+RI
Sbjct: 949 AERRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRIGVSFAGELFADSRLRASSGSSRAPRYDACTPPQRAGEQIRAGENCCALPLPHAQQQ-VSSQRQRRSWSAPTLFSEWSKKHDTEADRVVAPGGAQKENLLGLGGVPPDVVGAWLALAIEGIYSHNDSGGGVTDERI 1177 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17609.1 >prot_E-siliculosus-1a_M_contig96.17609.1 ID=prot_E-siliculosus-1a_M_contig96.17609.1|Name=mRNA_E-siliculosus-1a_M_contig96.17609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=230bp AESRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSback to top mRNA from alignment at E-siliculosus-1a_M_contig96:490238..490928+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17609.1 ID=mRNA_E-siliculosus-1a_M_contig96.17609.1|Name=mRNA_E-siliculosus-1a_M_contig96.17609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=691bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:490238..490928+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:490238..490928+ >mRNA_E-siliculosus-1a_M_contig96.17609.1 ID=mRNA_E-siliculosus-1a_M_contig96.17609.1|Name=mRNA_E-siliculosus-1a_M_contig96.17609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1380bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:490238..490928+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |