mRNA_E-siliculosus-1a_M_contig96.17601.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.380e-41 Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 1 Query: 1 MSSPKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPAPK 240
M+S KPTYN MVFDAIKTLKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKGVE+GKFIK+K+SYKLSAEAKKPAPK
Sbjct: 1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.290e-37 Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1 Query: 13 KPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPAP 237
KPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYP LNFTPHQMR ALKKGVE+GKFIK+K+SYKLS EAKKPAP
Sbjct: 98 KPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI) HSP 1 Score: 132 bits (331), Expect = 4.160e-36 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPAPK 240
MVFDAIK+LKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP PK
Sbjct: 1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.650e-35 Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPAPK 240
MVFDAIKTLKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKGVE+GKF+K+K+SYKLSAEAKKPAPK
Sbjct: 1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.940e-33 Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1 Query: 4 SSPKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPA 234
++ KPTY+VMVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG E+GKFIKVKSSYKLS EAKKPA
Sbjct: 3 TTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.550e-29 Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPA 234
MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG E+GKFIKVKSSYKLS EAKKPA
Sbjct: 1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE) HSP 1 Score: 105 bits (262), Expect = 6.270e-27 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLS 213
MVFDAIKTLKERNGSSIQA+KKSITATYPAL+FTPHQMRSALKKGVETGKFIKV+ + L+
Sbjct: 1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.470e-24 Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1 Query: 16 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 231
PTY+ M AI LKERNGSS+ AIKK I ATYP LNF PHQ+R ALKKG ETG FIKVK+SYK+S EAKKP
Sbjct: 2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI) HSP 1 Score: 103 bits (258), Expect = 5.540e-24 Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 1 Query: 16 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPAPK 240
PTY+ M +A+K LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKGVE+GKFIKVK+SYKLSA ++PA K
Sbjct: 2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 5.890e-22 Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 16 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSA 216
PTY+ M +A+K LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKGVE+GKFIKVK+SYKLSA
Sbjct: 2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17601.1 >prot_E-siliculosus-1a_M_contig96.17601.1 ID=prot_E-siliculosus-1a_M_contig96.17601.1|Name=mRNA_E-siliculosus-1a_M_contig96.17601.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=163bp MSSPKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPALNFTPHQMRSback to top mRNA from alignment at E-siliculosus-1a_M_contig96:439565..441980- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17601.1 ID=mRNA_E-siliculosus-1a_M_contig96.17601.1|Name=mRNA_E-siliculosus-1a_M_contig96.17601.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2416bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:439565..441980- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:439565..441980- >mRNA_E-siliculosus-1a_M_contig96.17601.1 ID=mRNA_E-siliculosus-1a_M_contig96.17601.1|Name=mRNA_E-siliculosus-1a_M_contig96.17601.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=978bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:439565..441980- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |