mRNA_E-siliculosus-1a_M_contig96.17596.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI) HSP 1 Score: 154 bits (389), Expect = 8.590e-41 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 Query: 1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK
Sbjct: 1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.790e-34 Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 1 Query: 7 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAP 237
+ KPTYN MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMR ALKKGVESGKFIKMKASYKLS EAKKPAP
Sbjct: 96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE) HSP 1 Score: 134 bits (336), Expect = 4.200e-33 Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKF+KMKASYKLSAEAKKPAPK
Sbjct: 1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI) HSP 1 Score: 125 bits (314), Expect = 8.490e-30 Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKGVE+GKFIK+K+SYKLSAEAKKP PK
Sbjct: 1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI) HSP 1 Score: 121 bits (304), Expect = 1.270e-28 Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 Query: 1 MAST-KPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 234
MA+T KPTY+ MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct: 1 MATTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.340e-25 Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 234
MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct: 1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 6.800e-22 Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1 Query: 31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLS 213
MVFDAIKTLKERNGSSIQA+KKSITATYP L+FTPHQMRSALKKGVE+GKFIK++ + L+
Sbjct: 1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.510e-21 Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1 Query: 16 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKP 231
PTY+ M AI LKERNGSS+ AIKK I ATYPTLNF PHQ+R ALKKG E+G FIK+KASYK+S EAKKP
Sbjct: 2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.500e-20 Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1 Query: 16 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
PTY+ M +A+K LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKGVESGKFIK+K SYKLSA ++PA K
Sbjct: 2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.660e-18 Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 Query: 16 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSA 216
PTY+ M +A+K LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKGVESGKFIK+K SYKLSA
Sbjct: 2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17596.1 >prot_E-siliculosus-1a_M_contig96.17596.1 ID=prot_E-siliculosus-1a_M_contig96.17596.1|Name=mRNA_E-siliculosus-1a_M_contig96.17596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=163bp MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSback to top mRNA from alignment at E-siliculosus-1a_M_contig96:415048..418162+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17596.1 ID=mRNA_E-siliculosus-1a_M_contig96.17596.1|Name=mRNA_E-siliculosus-1a_M_contig96.17596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3115bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:415048..418162+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:415048..418162+ >mRNA_E-siliculosus-1a_M_contig96.17596.1 ID=mRNA_E-siliculosus-1a_M_contig96.17596.1|Name=mRNA_E-siliculosus-1a_M_contig96.17596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=978bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:415048..418162+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |