mRNA_E-siliculosus-1a_M_contig96.17592.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17592.1 vs. uniprot
Match: D8LQ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ84_ECTSI) HSP 1 Score: 1312 bits (3396), Expect = 0.000e+0 Identity = 732/809 (90.48%), Postives = 746/809 (92.21%), Query Frame = 3 Query: 63 MALRDMDDPYEDDAAVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAAXXXXXXXPHGSDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMTTTAKVHDSAIGVAVPCREAKGEGEENDDGVPSRNGCTITIEERNALELWVEMLGICLLPFCGSGGGSRSSSRSGVAEAASDDDGISRDPSGEHGDDPFDSDNEEEEDGAHDDEVEGSRVSGGGKARSRWVAGWMRRAGVTLAEPLECPFDVQPGGRDEDLPARLATLISYHAQAAASASRPASVXXXXXXXXXXXXXXXXXXXXXXXXDVTPSESHAAVVEEAFSCLLFLSETVPESSAQAECVKAALVSLKECAQSARLHCLEHRVPAALSILEGVPSRLKLLLTRSKSQGAKVYSTARSFCREALAAAVACARKLIGLAGGPVVMDDPRWFLETFVVKMASPLLLGDAVGALRAASMAARGMGTAAEGGEERGPDGNTSSGMETSLREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGATVGGGGTAGAA--PATGDVLAAASDREPAAAQPFTEAALEFTCGVVEREWVGKRGERGEQEGGDDQESIIMLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEQCSGEFFEGKRSKLRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWIRSTR 2483
MALRDMDDPYEDDA VKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAA PH SDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMT TAK HDSAIGVAVPCRE KGEGEENDDG PSR+G TITIEERNALELWVEMLGICLLPFCGSGGGSR++SRSG+ EA S DD SRDPSGEHGDDPFDSD GSRVSG GKARSRWVAGWMRRAG+TLAEPLECPFDV+PGGRDED+P RLATLISYHAQAAASASRPASV XXXXXXXXXXXXXXXXXXXXXXX TPSESHA VVEEAFSCLL LSETVPESSAQAECVKAALVSLKECAQSARL CLEHRVPAALS+LEGVPSRLKLLLTRSKSQGAKVYSTARSFCREAL AAVACARKLIGL GG VVMDDPRWFLETFVVKMASPLLLGDAVGALRAAS+AARGMGTAAEGGEERGPDG+T SGMET+LREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGA PA GDVLAAASDREPAAAQ FTEAALEFTCGVVEREWVGKRGERGEQEGGD QESII LVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALE+CSGEFFEGKRSK+RFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSW+R TR
Sbjct: 1 MALRDMDDPYEDDATVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAAAAAAA--PHSSDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMTRTAKAHDSAIGVAVPCRETKGEGEENDDGFPSRSGRTITIEERNALELWVEMLGICLLPFCGSGGGSRTTSRSGLGEATSGDDDNSRDPSGEHGDDPFDSDXXXXXXXXXXXXXXGSRVSGDGKARSRWVAGWMRRAGITLAEPLECPFDVRPGGRDEDMPVRLATLISYHAQAAASASRPASVSXXXXXXXXXXXXXXXXXXXXXXXXXTPSESHALVVEEAFSCLLCLSETVPESSAQAECVKAALVSLKECAQSARLRCLEHRVPAALSMLEGVPSRLKLLLTRSKSQGAKVYSTARSFCREALTAAVACARKLIGLVGGLVVMDDPRWFLETFVVKMASPLLLGDAVGALRAASLAARGMGTAAEGGEERGPDGSTPSGMETALREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGAAXXXXXXXXXXXXPAAGDVLAAASDREPAAAQQFTEAALEFTCGVVEREWVGKRGERGEQEGGDGQESIITLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSKMRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWVRLTR 807 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17592.1 >prot_E-siliculosus-1a_M_contig96.17592.1 ID=prot_E-siliculosus-1a_M_contig96.17592.1|Name=mRNA_E-siliculosus-1a_M_contig96.17592.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=808bp MALRDMDDPYEDDAAVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLback to top mRNA from alignment at E-siliculosus-1a_M_contig96:378634..391099+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17592.1 ID=mRNA_E-siliculosus-1a_M_contig96.17592.1|Name=mRNA_E-siliculosus-1a_M_contig96.17592.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12466bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:378634..391099+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:378634..391099+ >mRNA_E-siliculosus-1a_M_contig96.17592.1 ID=mRNA_E-siliculosus-1a_M_contig96.17592.1|Name=mRNA_E-siliculosus-1a_M_contig96.17592.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4848bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:378634..391099+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |