Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
D8LQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ88_ECTSI)
HSP 1 Score: 305 bits (780), Expect = 9.200e-99
Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 1
Query: 187 MTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESVSDIYGTPPGGVVSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 675
MTTSRGGCWSTLIEE+SGCQTCIVQATSSSTTATDDPPA+QWNSSVFS FFEMELDPCPESVSD YGTPPGGVVSYQEVLSADCR SD XXXXXX SVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG
Sbjct: 1 MTTSRGGCWSTLIEEQSGCQTCIVQATSSSTTATDDPPASQWNSSVFSKFFEMELDPCPESVSDFYGTPPGGVVSYQEVLSADCRHSDDDNXXXXXXDSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 163
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI)
HSP 1 Score: 170 bits (431), Expect = 1.780e-41
Identity = 106/282 (37.59%), Postives = 145/282 (51.42%), Query Frame = 1
Query: 145 RGKGAFFSGCTSRSMTTSRGGCWST------LIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESV--SDIYGTPPGGV--VSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENS--CYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGA---SCLEITPYYPKAWNPFSCEVNKQYVCERPAAPG---SGSSSP 936
RGKGAF SGC + S + GGCW+ IEE GCQTC +Q + ++ +VF F ELDPCP+ + + +Y GG+ V+ + S C + WL FE++ CY KS A N DA + C E GA +++++SEAENDF+ HN+L+ GF GE YTG+ K S W W + ++ + DW EG + + G SC+EI PY PK WNPFSC+V K YVCE PA G +G++SP
Sbjct: 6 RGKGAFLSGCVTLSDESYLGGCWTQDDDFGERIEETDGCQTCTIQEDA-------------FSEAVFPIMFPAELDPCPDDLDYTALYEGTYGGLSLVTAASLSSTGCPEG-------------WLYFEDTGNCYFKSPNTAKAENQADAVSICEEEGAWVIAIDSEAENDFLLHNMLFTGFFGETYTGMTKESPSDEWEWPAESSDTA---YNCVGDYSDWLEGAEIGCAAVFDGGEDGSCMEIFPYEPKGWNPFSCDVGKHYVCEMPATAGGEETGTASP 258
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
A0A383WIY0_TETOB (C-type lectin domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WIY0_TETOB)
HSP 1 Score: 95.1 bits (235), Expect = 9.010e-17
Identity = 98/328 (29.88%), Postives = 140/328 (42.68%), Query Frame = 1
Query: 112 CATLVPIEDRRRGKGAFFSGCTSRSMTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESVSDIY------GTPPGGVVSYQEVLSADCRDSDXXXXXXXXXXSVWL--AFENSCYSKSS-YLDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQK--TSD---DGTWSWRDSLAGFTP-----GDFDASVSFQDW---GEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCER-PAAPGSGSSSPQQSATTGPELSPSPVDDGVARGSQGTPA 1020
C L+ E+ RG G F+ S S G W + + C+TCI TS + A+DD PA CP V Y VV L+ + + WL + CY KSS + +++A RC + GA ++++ E++FV NLL++G GE YTGL+K +SD D W W + + T G S+ ++ G G+ SY G C+EI P PK WNPF+C+V KQY+CER P PG ++P T GP +P+ V + G PA
Sbjct: 26 CPALMAEEEVIRGFGTFYD-----STCASAAGDWGGV----NCCRTCIWHNTSVAQFASDDLPA------------------CPPCVRQYYEAAFRLANASLNVVPLTAYLNPE---------KCPFGANGWLYNPANDRCYYKSSGRRGISSGFDNAVMRCNTLHAGASMININDAQEDEFVRLNLLYVGTFGETYTGLKKLGSSDPAFDNQWYWLQNASQLTAPLASVGSRLLPTSYNNFNYPGRGI----SYSEAGPLCMEILPQKPKFWNPFACDVIKQYLCERAPVQPGENYTTPALPCT-GPPAAPAGTARTVLLVNAGGPA 312
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
A0A7J7Q9X4_9CHLO (C-type lectin domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9X4_9CHLO)
HSP 1 Score: 77.8 bits (190), Expect = 2.510e-11
Identity = 72/200 (36.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query: 481 SVWL--AFENSCYSKSSY---LDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYT----------GLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPAA-PGS--GSSSPQQSATTGPELSPSPVDDGVARGSQGTPA 1020
S WL N CY KSSY + A + DA RC + GA ++++ E +FV NLL+ GF GE YT GLQ W+ +S+A D+ +F + G G D Y + C+EI P PK +NPFSC V KQY+CER A PG G Q TGP +P+ V+ + G PA
Sbjct: 100 SGWLYNPANNRCYYKSSYDRGISAGIT--DAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTSCICPSATARGLQLPQ--AAWARPESVAT----DYH---NFNEPGRGFD----YYESEVVCMEILPNKPKYYNPFSCAVLKQYICERSVAQPGETFGPGPTPQLPCTGPPAAPAGALRTVSLVNAGGPA 284
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
K1QVJ2_CRAGI (Low affinity immunoglobulin epsilon Fc receptor n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QVJ2_CRAGI)
HSP 1 Score: 68.2 bits (165), Expect = 6.040e-10
Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 1
Query: 409 SYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVN-WEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCER 903
S V S CRD WL NSCY+ ++DA + W +A C VGA+LV +E+E+EN+F+ +L IG + GL +G + W+ + +V + DW G + C E+ + WN C V ++CE+
Sbjct: 13 SVYAVNSQGCRDG-------------WLHHGNSCYA---FIDAEPDGWIEAMFYCSSVGAKLVEIETESENNFLKRHLQTIGATKNYWIGLSDAIKEGRFVWQTTQD---------NVDYTDWAPGEPNDDHHTE---DCAELFQPFSFHWNDAPCSVKSNFICEK 150
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
A0A485P1I4_LYNPA (C-type lectin domain family 4 n=1 Tax=Lynx pardinus TaxID=191816 RepID=A0A485P1I4_LYNPA)
HSP 1 Score: 62.4 bits (150), Expect = 5.400e-8
Identity = 42/143 (29.37%), Postives = 68/143 (47.55%), Query Frame = 1
Query: 487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYT---GLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERP 906
W +F++SCY L+ W ++ C ++GA LV++ SEAE +F+ + FL ++ GL +G WSW D TP FD + F W EG ++Y+ + + AWN F C ++ +C+ P
Sbjct: 17 WRSFQDSCYLP---LNDNKTWAKSERNCTDMGAHLVTITSEAEQNFI------VQFLDRRFSYFLGLTDEDHEGQWSWVDK----TP--FDPHIVF--WHEGEP--NNYKQNENCVILVNVQDKWAWNDFPCNFERRRICKLP 140
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
A0A6J8DY73_MYTCO (C-type lectin domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DY73_MYTCO)
HSP 1 Score: 63.9 bits (154), Expect = 7.660e-8
Identity = 40/142 (28.17%), Postives = 61/142 (42.96%), Query Frame = 1
Query: 487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFD-ASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPA 909
W++F N CY ++ V W+ A C G RLV +++ E+ ++T L E + G+ +G W W DFD +S+SF W G E+ G C + WN C + YVCE+P+
Sbjct: 107 WISFSNHCYL---FVYEKVTWKHAKVECQNKGGRLVKIDNNDEDSWLTSVL-----KDEVWMGMSDIQIEGYWIW----------DFDMSSLSFNQWHPGEPNGGGRENCGLYCKQRCKQSSFVWNDAVCSLVYGYVCEKPS 230
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
A0A7J7PFC2_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFC2_9CHLO)
HSP 1 Score: 66.6 bits (161), Expect = 8.030e-8
Identity = 70/215 (32.56%), Postives = 91/215 (42.33%), Query Frame = 1
Query: 481 SVWL--AFENSCYSKSSY---LDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYT----------GLQKTSDDGTWSWRDSLAGFTPGDFDASVS---------------FQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPAA-PGS--GSSSPQQSATTGPELSPSPVDDGVARGSQGTPA 1020
S WL + CY KSSY + A + DA RC + GA ++++ E +FV NLL+ GF GE YT LQ + + + P SVS F + G G D Y C+EI P PK +NPFSC V KQY+CER A PG G Q TGP +P+ V+ + G PA
Sbjct: 108 SGWLYNPANDRCYYKSSYDRGISAGIT--DAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTFNALPSCVARPLQYMLRMPLQAHQVLVEAGMPSSMSHSVSGAVLHSAKQATDYHNFNEPGRGFD----YYELEVVCMEILPNKPKYYNPFSCAVLKQYICERSVAQPGETFGPGPTPQLPCTGPPAAPAGALRTVSLVNAGGPA 316
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
UPI00046B7F83 (C-type lectin domain family 4 member E isoform X1 n=2 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00046B7F83)
HSP 1 Score: 62.8 bits (151), Expect = 1.750e-7
Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1
Query: 403 VVSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPA 909
V Y+E + +C ++ S W+ F++SCY S+ + W ++ C +GA LV + SE E +F+ H E Y GL DG W W D TP F S+SF W EG + ++ + + + + WN +C +N ++CE PA
Sbjct: 57 VQPYEEFVEFNCYNNVSGSVKNCCPLS-WIHFQSSCYFFSTN---TLTWSESVKNCSSMGAHLVVINSEEEQEFLFHAK---PKNREFYIGLTDQVIDGQWKWVDG----TP--FTESLSF--WAEG-EPNNLVTVEDCATIRDSKNPRQNWNDMACFLNMFWICEMPA 209
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match:
A0A6P4WWQ3_PANPR (C-type lectin domain family 4 member D n=14 Tax=Felidae TaxID=9681 RepID=A0A6P4WWQ3_PANPR)
HSP 1 Score: 60.8 bits (146), Expect = 6.500e-7
Identity = 43/140 (30.71%), Postives = 67/140 (47.86%), Query Frame = 1
Query: 487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERP 906
W +F++SCY L+ W ++ C ++GA LV++ SEAE +F+ LL F + GL +G WSW D TP FD + F W EG ++Y+ + + AWN F C ++ +C+ P
Sbjct: 84 WRSFQDSCYLP---LNDNKTWAKSERNCTDMGAHLVTITSEAEQNFIIQ-LLDRRF--SYFLGLTDEDHEGQWSWVDK----TP--FDPHIVF--WHEGEP--NNYKQNENCVILVNVQDKWAWNDFPCNFERRRICKLP 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 9.20e-99 / Id = 94.48 Expect = 1.78e-41 / Id = 37.59 Expect = 9.01e-17 / Id = 29.88 Expect = 2.51e-11 / Id = 36.00 Expect = 6.04e-10 / Id = 27.71 Expect = 5.40e-8 / Id = 29.37 Expect = 7.66e-8 / Id = 28.17 Expect = 8.03e-8 / Id = 32.56 Expect = 1.75e-7 / Id = 28.40 Expect = 6.50e-7 / Id = 30.71 Sequence D8LQ88_ECTSI D8LHR0_ECTSI A0A383WIY0_TETOB A0A7J7Q9X4_9CHLO K1QVJ2_CRAGI A0A485P1I4_LYNPA A0A6J8DY73_MYTCO A0A7J7PFC2_9CHLO UPI00046B7F83 A0A6P4WWQ3_PANPR Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 1617 Model size 1617 Exons 8 Ec32 ortholog Ec-26_005740.1 Ec32 ortholog description C-type lectin fold Hectar predicted targeting category signal peptide BRITE ko00000,ko00001,ko04090,ko04091,ko04131 Best eggNOG OG NA|NA|NA Best tax level Aves COG Functional cat. T EggNOG OGs 38GR9@33154,3BBE1@33208,3CTZ0@33213,4803E@7711,48X4Q@7742,4GKFD@8782,KOG4297@1,KOG4297@2759 EggNOG free text desc. Macrophage mannose receptor 1-like GOs GO:0002237,GO:0002376,GO:0003674,GO:0004888,GO:0005488,GO:0005537,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005886,GO:0005887,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0023052,GO:0030246,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032496,GO:0033993,GO:0034097,GO:0034341,GO:0036094,GO:0038023,GO:0038024,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045087,GO:0048029,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0051716,GO:0060089,GO:0065007,GO:0070670,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071346,GO:0071353,GO:0071396,GO:0071944,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901700,GO:1901701 KEGG Pathway ko04145,ko05152,map04145,map05152 KEGG ko ko:K06560 Preferred name MRC1 Seed eggNOG ortholog 59894.ENSFALP00000007767 Seed ortholog evalue 2.1e-09 Seed ortholog score 70.9 Taxonomic scope Metazoa
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936534.6760578-CDS-E-siliculosus-1a_M_contig96:352600..352811 1622936534.6760578-CDS-E-siliculosus-1a_M_contig96:352600..352811 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 352601..352811 - 1696251120.802269-CDS-E-siliculosus-1a_M_contig96:352600..352811 1696251120.802269-CDS-E-siliculosus-1a_M_contig96:352600..352811 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 352601..352811 - 1622936534.6936755-CDS-E-siliculosus-1a_M_contig96:353598..353781 1622936534.6936755-CDS-E-siliculosus-1a_M_contig96:353598..353781 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 353599..353781 - 1696251120.8170993-CDS-E-siliculosus-1a_M_contig96:353598..353781 1696251120.8170993-CDS-E-siliculosus-1a_M_contig96:353598..353781 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 353599..353781 - 1622936534.7104213-CDS-E-siliculosus-1a_M_contig96:354336..354683 1622936534.7104213-CDS-E-siliculosus-1a_M_contig96:354336..354683 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 354337..354683 - 1696251120.8279552-CDS-E-siliculosus-1a_M_contig96:354336..354683 1696251120.8279552-CDS-E-siliculosus-1a_M_contig96:354336..354683 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 354337..354683 - 1622936534.7268822-CDS-E-siliculosus-1a_M_contig96:355390..355593 1622936534.7268822-CDS-E-siliculosus-1a_M_contig96:355390..355593 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 355391..355593 - 1696251120.842348-CDS-E-siliculosus-1a_M_contig96:355390..355593 1696251120.842348-CDS-E-siliculosus-1a_M_contig96:355390..355593 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 355391..355593 - 1622936534.7457504-CDS-E-siliculosus-1a_M_contig96:356132..356239 1622936534.7457504-CDS-E-siliculosus-1a_M_contig96:356132..356239 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 356133..356239 - 1696251120.8536747-CDS-E-siliculosus-1a_M_contig96:356132..356239 1696251120.8536747-CDS-E-siliculosus-1a_M_contig96:356132..356239 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 356133..356239 - 1622936534.7670183-CDS-E-siliculosus-1a_M_contig96:356439..356744 1622936534.7670183-CDS-E-siliculosus-1a_M_contig96:356439..356744 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 356440..356744 - 1696251120.8645797-CDS-E-siliculosus-1a_M_contig96:356439..356744 1696251120.8645797-CDS-E-siliculosus-1a_M_contig96:356439..356744 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 356440..356744 - 1622936534.7841785-CDS-E-siliculosus-1a_M_contig96:357273..357458 1622936534.7841785-CDS-E-siliculosus-1a_M_contig96:357273..357458 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 357274..357458 - 1696251120.874132-CDS-E-siliculosus-1a_M_contig96:357273..357458 1696251120.874132-CDS-E-siliculosus-1a_M_contig96:357273..357458 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 357274..357458 - 1622936534.8015592-CDS-E-siliculosus-1a_M_contig96:357650..357726 1622936534.8015592-CDS-E-siliculosus-1a_M_contig96:357650..357726 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 357651..357726 - 1696251120.8837774-CDS-E-siliculosus-1a_M_contig96:357650..357726 1696251120.8837774-CDS-E-siliculosus-1a_M_contig96:357650..357726 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 357651..357726 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17588.1
>prot_E-siliculosus-1a_M_contig96.17588.1 ID=prot_E-siliculosus-1a_M_contig96.17588.1|Name=mRNA_E-siliculosus-1a_M_contig96.17588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=539bp
MYQSRKVKRGVVASNTVVLAVVLGSVTGILAASTTEECATLVPIEDRRRG back to top mRNA from alignment at E-siliculosus-1a_M_contig96:352601..357726-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17588.1 ID=mRNA_E-siliculosus-1a_M_contig96.17588.1|Name=mRNA_E-siliculosus-1a_M_contig96.17588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5126bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:352601..357726- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)ATGTACCAAAGCCGGAAAGTGAAGCGTGGTGTAGTGGCAAGCAACACAGT
GGTGCTCGCGGTTGTTCTGGGCTCAG GTACGGTCGCACGGCGTCCCGGAA
ATGTATGTATCGGTCGGTTGCAGCTGCTGGCAACCAACACAGATCGGTGA
GGCATGCGATCCATGAAGATCGCGAGAAAAAATAAAGATCCGAATGGCCT
CCGCCGTCATCTGATATGACGGACCAACTGCCTTTGCATTTTGTTCGCGA
AAAACACAACAAACGCAGTCACAGGTATCCTGGCCGCGTCGACCACTGAA
GAATGTGCGACGCTGGTGCCGATTGAAGACCGAAGGAGGGGGAAAGGGGC
GTTTTTCAGCGGCTGTACAAGCCGGTCGATGACTACTAGCCGCGGCGGGT
GCTGGTCTACGCTCATCGAAGAGGAGAGTGGGTGCCAAACGTGCATTGTG
CAG GTCCGCATCTCGTCCTTAGATCATGTGTTGCTGTGCACTCGTTGTCT
CTCTGTGGTCGGTGGTTTTTAGATAGTCTGTGGATACATTCCATTCACCG
TGTACCGGTGCGTGAACTACTGCTGTAACAACTGGTGCTGCTGATGTTGT
AAAATATGTTTGTGTTCTAGTTTGCAGTCCCATCACTTCTTTCTACGGCA
GGGTTTTCCCCGCTTTCCGAATCCGGTGATGACGTGTGTGCTCACGTTGT
TTCGTACCACAGATGATAGGAATAGGTCCTAGGGGTGGCAAATCTGACCA
ACACAATACGGAAGTGCGACTCCCGCAGAGATCCTCCCAAAGCCTCCTCC
CAAAGCCAACATGCTCGATATCGCCACCCTCCCTGTTGCGTAGTAATCAA
GCGTCCATATGGTCCAGGAGATGAGTTCTTCTACCCCCTCGAGTATATCC
TCCTCCTCCCCTGGCGCTCCAAAGTAGTTGTGTATCATCATGCTGAATGT
TGTCGTCCCGAACGGGTGAACCAACACCACAGGCCACCAGCAGCAGCACA
ACCGCAACCGATGACCCGCCGGCGGCACAGTGGAATTCCTCGGTGTTCAG
CACGTTCTTCGAGATGGAGCTAGACCCTTGCCCCGAATCCGTCTCTGATA
TATACGGGACTCCGCCAGGGGGCGTCGTGTCCTACCAGGAGGTGCTATCG
GCCGACTGCCGTGACAGCGACGACGACAATGACGACAATGACGACAGCGA
CAGCGTGTGGCTCGCGTTCGAGAACAGCTGCTACTCCAAGAGCTCATACT
TGGACGCGGCAGTCAACTGGGAGGATGCGGACGCTAG GTGAGTAGACAGA
GGTTTCTCAGAGGACAGATGATGGGCTTTCCTGGCAAGACCACCCGATCG
CCTTAGCTGTTTTTTTTGGGGGGCCCCAGTCAGGCAAAAATTGGTATCCA
CGAGAATTTCTGTGGCTGTTAGTCGCTTTTTCGTTCACGTCGGTTTCTCT
GGATGAACGGGGGTGACGACGTTGGGTCCAATTACAGGTGTGGGGAGGTG
GGTGCGAGGCTCGTGAGCCTTGAAAGCGAGGCCGAGAATGACTTCGTCAC
TCACAATCTGCTGTGGATTGGTTTCCTTGGCGAGGCGTACACAG GTGAGC
TTTTCCTTCTTCCGGGCGGTGCTCCAGGCAAGACTTCGTGCCCCCCTAGG
AGTCTCGCACCTCATACAAATGCTGCCTGCCTACAGTGCACCAGAATGGC
GTTGAGTGATGTGATACGCAATCGAGAGCATTACTACCCAGCTTTTGTCC
TCCCTCCTCCGCCCTGATCTGCACACGCCACAAAGAACATGGGGGTGCTG
GCGTCGAACCCATCCACCCGCTCTCACAACTTTCGTTCGCCGCCCCCTAT
AGAAACCCAAAGGTGTAGGTATAATGTTGCACCGCTGATTGTGCAAGGAA
TGTTGTCTCGGTAAACCCCGAGCCTAACACTCACGGAAACGTGCCAGCTG
GTGTGCCTTATACCGCGACCGTGGAAGGGGGGCCTACTGCAACCATGTTC
GACAGAAGGCTGGACATGGTTGACCTCTACCAACGTACGTGGAATTCATG
ATTTTATGATGGTCATCTCTTGGCGTTGCGTTTCCCAAAATGAGACGCAC
GTGTTTTCTTGCATCATCAACACATGCCTTTAGGACTGCAAAAGACATCC
GATGACGGCACGTGGAGCTGGCGGGACTCCCTGGCCGGCTTTACGCCCGG
AGACTTCGACGCGTCCGTGAGTTTTCAGGACTGGGGGGAAGGACTAGACG
CCTCCTCTTCCTACGAGAGCACGGGAGCCTCTTGCCTGGAGATAACCCCT
TACTACCCCAAAGCGTGGAACCCTTTCTCGTGCGAG GTGTGTAGACACAC
AGCGCCGTCGTTGTGCTGTCGTTGTTGTCGTCGTTGTCGTCGTGGTCGTG
GTCGTGGTCGTTGTCGTTTTTGTTGTGTTTTTGTTGTTGTTGTTGCAACA
TCCAGGTTGTGGCCCCGAGGGTTTCTGAGCTTGGGGGGCGTCGTGGAGAC
GTTTTAGGTCAGTGTCTTCATTTGTTATTGACTATATCGTTACATGTTTG
TGCCGGCCAATGGACATGAACTTGAGCGCCTGTTGTCCGGCCGTAGAGTT
AAGTCTTGCCGTGCTATGAGCTGCCTACCCGCGGCCGTACCCACTGTCCT
GCTTTCACTGATAGTGATATTACCTTCGTATTTAGTGTCGACTCGCCAAA
CGTACGAGGAATGCTCATGCTTGGTATTGAGGAACACGGCTGTTTCGCTT
CAATTGGTTTAGACTTCACATTTCGAGCGGCCCTTTTAGGTTCAATCACT
TCAAGGACAGAAATACCTCATGGGTTGGGATGTAGGCCGGGACCGAATAA
AAAAAGCTCGCACCAAGCGCAACCCAAACGTCCGAAGACCTCCCCAAAAC
CTGCATCGAGACAAAGCTACGCTAACCAGCCCTCGACGCACATGAGGAGC
AGCGCTGGACCAAACTTCAGGTTCGGCTAGAGATTTCTTGCCGGTCTCCC
CTTACTCCGCGTCCGTCATGCCTGTGTCCCCTTTCACCCCAAGGTGAACA
AGCAATACGTGTGCGAGAGGCCAGCAGCGCCGGGATCGGGTTCCTCCAGC
CCCCAACAATCGGCTACGACAGGCCCGGAGCTATCCCCTTCACCGGTGGA
CGATGGTGTAGCACGTGGTTCTCAGGGTACACCCGCACCTACCGCCTCCG
CCACAGCCTCGTTCGTCGGATCAGCTTCTTCCGAGGAATTTTCTTCGAAC
TTTCGCACGGAATCGCCCACCGGGTCACCAACGGGGTCTCCGACATCTGC
CCCAACAGCAATGTACAGCCTGGCGGATGGTACCATGGTCGCCAGGGATG
ACGCCAGCTGCGCAGAGAGGCTGGGCGAACATGAACAGTT GTGAGTACAG
CGTGGCGGGGGGCATTGTTTGTGCAGCAACTCCACGGTGGCACGGCCGAC
GCCTAGCGCTGTTTTGATCTTGGAATCGTTGTCTGCATTAGCTCAAAGAT
CTCTCCTTTAGCTCAAAAGTCTTTCTTTTCCTATCTTGAGCATCTCTCTG
ATTCGGGGGTGCAGAAGCTAACCGCTTTGAACAATCTCTACCGTCATCGT
GATGACGCCCGTTTTCTTCGTCAAGTTTTGGAGTTGACGGTACCTGTGAT
GTGCAGAACGACAAAGGAGGGGTTCGAACGAGATGCTTCTGTGGGCTCAG
TAGGGCGGGGGGGGGGGTGTTGTGGTGCGTGGTATTCCAGTTTGCCTCAA
CTTCAAGTCCATGGAGTTTCATGGTGTGGGCACGTCGTCTACGTCCCTGG
GGTTGTCGACAAAGGGAAGATACAAACACACCTCTAACACGTGGGAATCT
TGCGGGGGGGCCCTCATTGTATCACACACCCTTGCGCCGATTCTCGTGAA
AATCCCCGACAAACTGGTGGTGCTACTTCCACGTTCGATTCGTAGGTCAT
TGGCCACATACGACATGAGCGTCTTCAATGATGCCGCCGGTTGTGAGGAA
ACCCTCCTCACGGAAGAGCCGCACTGGTGCAACTCCTTCGAGATCGGGCA
GGAGTGCCGCTCCTGCTGGTTGTCCTGCGACGGGGCTCGCCTGTACTTAG
CGGAATTTTCCTGGTTGCGGGACGACAA GTGAGAGAAATTATTCACTCAC
TCCGCGAGTCGATCTTCACAGCTTGTCTCTGGTCGTACCTCGACAACGTG
TCCGGTAGGAAAGGGTACGTGTTTGATTTAGCTCTCATGAGAACATATTT
TCATCCTCGTTTCCCTTTACGGCGTGGTATCGTCCCTACTGTTGTTTGTT
CTTGTGATTGTTTGGAGCTCATCAAATCCGACTAGAGGAAAAACTGGTTT
TGGTCGCCGTCGGTGGCCTTGTGCGCGATCAAGCGCTGACGAGATGGAAA
AACAGCTTATGTCTTGCTTTTCTACACGCGCGAGAACGTAGACGATGTTG
GGACTTGTTTTTGTTTTGTCTTCACCTCGGGAAGAAGGAGCCGCGGGCCG
AAAGGAAGCACGTTCAGCCCGCACACACCCCCTACAAAATGGCTACCGTC
ACGGCGAACAAGTTCTTATGCCCCCTTGTACGTTCCGCACACCCTTCCGC
GTCCGCCCCCACACACGACCTATGCGGTGTCTGTCATCATGTATTGTCTT
TGAACTTTAGGAACGAGCCGTGTAGCACGCCGTAGTAGTATCTCCTCATT
GTATATTGCAATTGTACATCTACACACGGAACCTCGTGGATCATCAGCTA
GCCGCTGCCGCTCGAACTGTCGTAAGAAATATACCAATATGCACGCCCAG
AGGAAAAACGATATACGTGCTCCATACACATGACCCATGAAAGCTCAACA
CCTGAAGGGAACTTTGATCTGCGTTCCTGTTTGGTGTCGCCATCGCTCTA
TCGAACCTCGCGCAGGATTATATTCTGCCCCGGCGTCGGCTTGTCAGACT
TCGGAGACGACTGTGGCAACGACGACAACAACGGCCACAACGATGATAAC
AGTCGTCCCCGCCACCGAAACCTAAGGGAGACATTTCAGAAATTTGATTC
CCTTTCCCAGGAAACGGCCCCGGCGATTAGAAGTCTATTATCGTCACAGT
TCCGCGTCTTCCTCCGGCGCCCGTGA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:352601..357726-
>mRNA_E-siliculosus-1a_M_contig96.17588.1 ID=mRNA_E-siliculosus-1a_M_contig96.17588.1|Name=mRNA_E-siliculosus-1a_M_contig96.17588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:352601..357726- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top