mRNA_E-siliculosus-1a_M_contig96.17583.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17583.1 vs. uniprot
Match: D8LQ92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ92_ECTSI) HSP 1 Score: 1874 bits (4854), Expect = 0.000e+0 Identity = 1097/1245 (88.11%), Postives = 1130/1245 (90.76%), Query Frame = 1 Query: 1 VPKLPESDDSSAKVDYETFSSSAGVGATLNATVIAAGHERPEPSKIAVSNDSASWSSGRLTSPPLPPXXPAYDDTLSTPLSPRRYHVSAAAPKPAPATAGDLTTAAPPSCAVARGMSEATDKTNPLSPSTSPRHEQPGSSPEFRMTMSSGAAATVPAPTRAAAGAAVGAGGVVPPPLPHRAIVLPALEKTDERGVADATKDGGGLAASTDLSDETPSNIVQEVAEDVAEGVADVMQAIRGVFGRGKSDDGDDADATPXXXXXXXXXXXXDSGTPEQKDFTVSAVLSRVESPEPSSSSSAPSPVHLDGGAAFSRVFGALKAAGVATDGDSSTEMGDEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKGEEKEDLGSSAVSRLRQMFERSDGKKRAILEAGRIPGQAVSTIGESAGEDEAAGEAMGATGSPQASPKAGSNSAEEEGANAAGLAAEGPAASVASGFGVSVHKFFFGSRTKKDAAPKAVEEPTPLAVADGAVVEPLGVARQKESSETGPFGDTKQAELGGLPAEASTSTQAVAPAVEKNVLLAAKDVSSVPAATVDVDSTPQLGGAASSASVHHSSSEPAISAGAAQDKAGDRTGEDIAVDVVAVEELVPVAEKESRQNPPVIVGAPAVVGVAGTAGQSEKPAADMSMLNIAQASAVEGVVHPNVPEERIAPEAAETTVTAVEAPTAKAYDGEATHAAAVVAAQTKEKIGAFEVAQVELIEPEIPAVDPPVPSDVHAVVEEGVSGPCATVGDELPTLGGVRQTTGALQDTRDEAPLQGANGEQQTVVAAVEDAMTAGDDDDPYVTVAEEEGPQDGDLAPLASATFDFSSPTTATNDGPLVEPSGDVPVIREVAPP-ATTESMVAASGDVPPLGKTVPSPSAPKNVSSPDSDCGVIAPSRAGPLPEVAAKASDTAKIGGSPTKTVVDQLAPGGGKEALSEEGEIEHQTPAPKQEGAPILASAPFDGTAVSDLEVSAVQAPGKTPQVQGTEQAASMVEDVVAAMGQASDIAPIEAAGVIPAESQAKPTATVEKPGEEKEVXXXXXXXXXXXXXXVTSAAVDPAPTVAADDVASPSPGENTTAPDVTEGDTTDGNVREPTEEPDIARDEEPFKAMDPSAMETKDEGPFPESTTETVLPRISGDGRDRPAVLPTDDTPSDKAEGGPPAAVPGDEACASGDESPSSTILHPEARPSYGDATQPATEAATGLIATIQSSGGGDADTSTARLEDNSTP 3732
+PKLPES+DSSAKVD+ +FSSSAGVGATLNATV+ AGHERPEPSKIAVSNDSASWSS RLTSPPLP XX AYDDTLS PLSPRRYHVSAAAPKPAPATAGDL TAAPPSCAVARGMSEATDKTNPLSPSTSPRHEQPGSSPEFRMTMSSGAAAT+PAPTRA GVVPPPLPHRA VLPALEKTDERGVADATKD G LAASTD SDETPSNIVQEVAED+ EGVAD+MQAIRGVFGRGKSDDGDDADATPXXXXXXXXXXXXDSGTPEQ+DF VSAVLSRVESPEPSSSSSAPSPVHLDGGAAFSRVFGALKAAGVATDGDSSTEMGDEKE XXXXXXXXXXXXXXXXXX PKGEEKEDLGSSAVSRLRQMFERSDGKKRAILEAG IPGQAVSTIGES GEDEAAGEA GATGSPQASPKAGSNSAEEEGANAAGLAAE PAAS ASGFGVSVHKFFFGSRTKKDAAPKA EEPTPLAVADGAVVEPLGVA QKESSETGPFGDTKQA+LGGLPAE+STSTQAVAPAVE+ VLLAAKDVSSVPAA VDVDSTPQLGGAASSASVHHSS+EPAIS+GAAQDKAGDRTGE+IAVDVVAVEEL PVAEKESRQNPP IVGAPAVVGVAGTAGQSEKPAADMSMLN+AQASAVEG VHP+VPEERI PEAAETTVTAVEAPTAKAYDGEATHAAAV+AAQTKEKIGAFEVAQV+LIEPEIPAVDPPVPSDVHAVV EGVSGPCATVGDELPTLGGV QTTGALQDTRDEAPLQGANGEQQTVVAAVEDA TAGD D+PYVT AEEEGPQDGDLAPL+SATFDFSSPTTATNDGPLVEPSG+VP IREVAPP A TE MVA+ +SSPDSDCGVIAPSRAGPLPEVAAKA DTAKIGGSPTKTVVDQLAPGG +EALSEEGEIEHQTPAPKQE APILASAPF+GTAVS+LEVSAVQAPGK QVQ TEQAASMVEDVVAA+GQ SDIAPIEAAGVIPAESQAKP ATVEKP E+KEV VTSAA DPAPTVAADDVA+PSPGENTTAPD+TEGDTTDGNVREPTEEPDIARDEEP KAMDPSAMETK EGPFPESTTE V+PRI G GRDRPAVLP DDTPSDKAE GPPAAV GD CASGDESPS ILHPEARPSYGDATQPATEAATGLIATIQSSGGGDADTS+ARLEDNSTP
Sbjct: 1 MPKLPESEDSSAKVDFNSFSSSAGVGATLNATVVTAGHERPEPSKIAVSNDSASWSSSRLTSPPLPXXXXAYDDTLSMPLSPRRYHVSAAAPKPAPATAGDLATAAPPSCAVARGMSEATDKTNPLSPSTSPRHEQPGSSPEFRMTMSSGAAATMPAPTRAXXXXXXXXXGVVPPPLPHRATVLPALEKTDERGVADATKDSGDLAASTDQSDETPSNIVQEVAEDMGEGVADMMQAIRGVFGRGKSDDGDDADATPXXXXXXXXXXXXDSGTPEQRDFPVSAVLSRVESPEPSSSSSAPSPVHLDGGAAFSRVFGALKAAGVATDGDSSTEMGDEKEQDDEXXXXXXXXXXXXXXXXXX------------PKGEEKEDLGSSAVSRLRQMFERSDGKKRAILEAGPIPGQAVSTIGESTGEDEAAGEATGATGSPQASPKAGSNSAEEEGANAAGLAAERPAASAASGFGVSVHKFFFGSRTKKDAAPKAAEEPTPLAVADGAVVEPLGVAGQKESSETGPFGDTKQAKLGGLPAESSTSTQAVAPAVEQTVLLAAKDVSSVPAAIVDVDSTPQLGGAASSASVHHSSTEPAISSGAAQDKAGDRTGEEIAVDVVAVEELAPVAEKESRQNPPGIVGAPAVVGVAGTAGQSEKPAADMSMLNMAQASAVEGAVHPDVPEERIVPEAAETTVTAVEAPTAKAYDGEATHAAAVIAAQTKEKIGAFEVAQVKLIEPEIPAVDPPVPSDVHAVVAEGVSGPCATVGDELPTLGGVGQTTGALQDTRDEAPLQGANGEQQTVVAAVEDATTAGDKDEPYVTAAEEEGPQDGDLAPLSSATFDFSSPTTATNDGPLVEPSGNVPAIREVAPPPAITEGMVASXXXXXXXXXXXXXXXXXXXMSSPDSDCGVIAPSRAGPLPEVAAKAPDTAKIGGSPTKTVVDQLAPGGVEEALSEEGEIEHQTPAPKQEDAPILASAPFNGTAVSELEVSAVQAPGKMSQVQRTEQAASMVEDVVAAVGQESDIAPIEAAGVIPAESQAKPMATVEKPSEDKEVEKDGATEPIQVPGEVTSAAADPAPTVAADDVAAPSPGENTTAPDITEGDTTDGNVREPTEEPDIARDEEPVKAMDPSAMETKVEGPFPESTTERVIPRIIGSGRDRPAVLPKDDTPSDKAEEGPPAAVAGDVTCASGDESPSLAILHPEARPSYGDATQPATEAATGLIATIQSSGGGDADTSSARLEDNSTP 1233
BLAST of mRNA_E-siliculosus-1a_M_contig96.17583.1 vs. uniprot
Match: A0A6H5JGT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT3_9PHAE) HSP 1 Score: 1311 bits (3393), Expect = 0.000e+0 Identity = 818/1071 (76.38%), Postives = 850/1071 (79.37%), Query Frame = 1 Query: 862 VESPE-PSSSSSAPSPVHLDGGAAFSRVFGALKAAGVATDGDSSTEMGDEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------PKGEEKEDLGSSAVSRLRQMFERSDGKKRAILEAGRIPGQAVSTIGESAGEDEAAGEAMGATGSPQASPKAGSNSAEEEGANAAGLAAEGPAASVASGFGVSVHKFFFGSRTKKDAAPKAVEEPTPLAVADGAVVEPLGVARQKESSETGPFGDTKQAELGGLPAEASTSTQAVAPAVEKNVLLAAKDVSSVPAATVDVDSTPQLGGAASSASVHHSSSEPAISAGAAQDKAGDRTGEDIAVDVVAVEELVPVAEKESRQNPPVIVGAPAVVGVAGTAGQSEKPAADMSMLNIAQASAVEGVVHPNVPEERIAPEAAETTVTAVE-----APTAKAYDGEATHAAAVVAAQTKEKIGAFEVAQVELIEPEIPAVDPPVPSDVHAVVEEGVSGPCATVGDELPTLGGVRQTTGALQDTRDEAPLQGANGEQQTVVAAVEDAMTAGDDDDPYVTVAEEEGPQDGDLAPLASATFDFSSPTTATNDGPLVEPSGDVPVIREVAPPATTESMVAASGDVPPLGKTVPSPSAPKNVSSPDSDCGVIAPSRAGPLPEVAAKASDTAKIGGSPTKTVVDQLAPGGGKEALSEEGEIEHQTPAPKQEGAPILASAPFDGTAVSDLEVSAVQAPGKTPQVQGTEQAASMVEDVVAAMGQASDIAPIEAAGVIPAESQAKPTATVEKPGEEKEVXXXXXXXXXXXXXX------------------------------------VTSAAVDPAPTVAADDVASPSPGENTTAPDVTEGDTTDGNVREPTEEPDIARDEEPFKAMDPSAMETKDEGPFPESTTETVLPRISGDGRDRPAVLPTDDTPSDKAEGGPPAAVPGDEACASGDESPSSTILHPEARPSYGDATQPATEAATGLIATIQSSGGGDADTSTARLEDNSTPVSMETLGALNEDGAAGEATIEASDVGGAPYEQPTSV 3840
VESP SSSSSAPSPVHLDGGAAFSRVFGALKAAGVATDGDSSTEMGDE+E XXXXXXXXXXXXXXXXXXXXXXXXX PKGEEKED+ SSAVSRLRQMFERSDGKKRAILE G PGQAVSTIGE AGEDEAAGEA G+T SPQASPKAGSNSAEEEGANAAGLAAE PAASVASGFG SVHKFFFGSRTK+DAAPKAVE PTPLAVADGAVVEP GVA QKESSETG FGDTKQAELGGLPAEAS STQAVAPAVEKNVLLAAKDV SVPAA VD+DSTPQLGGAASSASVHHSS+EPAISAGAAQ+KAGDRTGE+I VDVVAVEELVPVA+KESRQNPPV VGAPAVVGVA A QSEKPAA++SMLNIAQAS V+G VHPNVPE RI P+AAETTVTAVE APTA+ YDGEATHAAAVVAAQTKEKIGAFEVAQVELI PEIP VD PVPSDV AVV EGVSGPCATVGDELPTLGGV QTTGALQD RDEAPLQGAN EQQ V YVT AEEEG QDGDLAPLASATFD SSPTTATNDGPLVEPSGDVPVIREVAPPATTE MVAA+GDV LGKT P P A SPDSDCGV+APSRAGPLPEVAAKA DTAKIG SP KTV DQLAPGGG++AL EEGEIEHQTPAP+QEGAPILAS+PFDGTAV++L+ SAVQAPGK PQVQGTEQAASMVEDVVA +GQASDIAPIEAAGVIPAESQAKPTATV KP EEKEV VTSAA DPAPTV ADDVA+ SP ENTTA TEGDTTDGNVREPTEEPDIA+DEEP KAMDPSA +TK EGPFPESTTETVL RI GDGRDRPAVLPT+DTPSDKAE GPPAAV GDE CA GDESPSS I+HPEARPSYGDA+QPATE ATGLIATIQSSGGGDADTSTARLEDNSTP DVG APY+Q +SV
Sbjct: 6 VESPALSSSSSSAPSPVHLDGGAAFSRVFGALKAAGVATDGDSSTEMGDEREQDDEPGKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEQPKGEEKEDIDSSAVSRLRQMFERSDGKKRAILETGPFPGQAVSTIGEPAGEDEAAGEAAGSTESPQASPKAGSNSAEEEGANAAGLAAEEPAASVASGFGFSVHKFFFGSRTKRDAAPKAVEAPTPLAVADGAVVEPFGVAGQKESSETGSFGDTKQAELGGLPAEASASTQAVAPAVEKNVLLAAKDVYSVPAAIVDMDSTPQLGGAASSASVHHSSTEPAISAGAAQEKAGDRTGEEIGVDVVAVEELVPVAQKESRQNPPVTVGAPAVVGVAAMASQSEKPAANVSMLNIAQASVVQGAVHPNVPEARIVPKAAETTVTAVEVTAVEAPTARVYDGEATHAAAVVAAQTKEKIGAFEVAQVELIAPEIPPVDRPVPSDVRAVVAEGVSGPCATVGDELPTLGGVGQTTGALQDIRDEAPLQGANSEQQAVAXXXXXXXXXXXXXXXYVTAAEEEGSQDGDLAPLASATFDLSSPTTATNDGPLVEPSGDVPVIREVAPPATTEGMVAATGDVLALGKTAP-PLAALKYMSPDSDCGVVAPSRAGPLPEVAAKAPDTAKIGRSPKKTVDDQLAPGGGEKALPEEGEIEHQTPAPEQEGAPILASSPFDGTAVNELDDSAVQAPGKMPQVQGTEQAASMVEDVVATVGQASDIAPIEAAGVIPAESQAKPTATVGKPSEEKEVNVTDATPILSRVARLRLMYEKNKVKRSPASLSTRKVEKDGATAPTQAPGEVTSAAADPAPTVTADDVAAASPFENTTAXXXTEGDTTDGNVREPTEEPDIAQDEEPVKAMDPSARKTKVEGPFPESTTETVLLRIFGDGRDRPAVLPTNDTPSDKAEEGPPAAVAGDETCAYGDESPSSAIVHPEARPSYGDASQPATETATGLIATIQSSGGGDADTSTARLEDNSTP-----------------------DVGIAPYKQTSSV 1052
BLAST of mRNA_E-siliculosus-1a_M_contig96.17583.1 vs. uniprot
Match: A0A6H5JM02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM02_9PHAE) HSP 1 Score: 457 bits (1176), Expect = 6.890e-148 Identity = 256/287 (89.20%), Postives = 262/287 (91.29%), Query Frame = 1 Query: 1 VPKLPESDDSSAKVDYETFSSSAGVGATLNATVIAAGHERPEPSKIAVSNDSASWSSGRLTSPPLPPXXPAYDDTLSTPLSPRRYHVSAAAPKPAPATAGDLTTAAPPSCAVARGMSEATDKTNPLSPSTSPRHEQPGSSPEFRMTMSSGAAATVPAPTRAAAGAAVGAGGVVPPPLPHRAIVLPALEKTDERGVADATKDGGGLAASTDLSDETPSNIVQEVAEDVAEGVADVMQAIRGVFGRGKSDDGDDADATPXXXXXXXXXXXXDSGTPEQKDFTVSAVLSR 861
+P LPES+DSSAKVDY FSSSAGVGATLNATV+AAGHERPEPSK AVSNDSASWSSGRLTSPPLPP PAYDDTLS PLSPRRYHVSAAAPKPAPATAGDLTTA PPSCAVARGMSEATDKTNPLSPSTSPRHEQ GS PEFRMTMSSGAAATVPAPTRA+ GAAVGAGGVVPPPLPHRAIV PALEKTDERGVADATKD GGLAASTD SDETPSNIVQEVAEDVAEGVAD+MQ IRGVFGRG+SDDGDDAD TPXXXX DSGTPEQKDF VSAVLSR
Sbjct: 1 MPNLPESEDSSAKVDYNFFSSSAGVGATLNATVVAAGHERPEPSKTAVSNDSASWSSGRLTSPPLPPPQPAYDDTLSMPLSPRRYHVSAAAPKPAPATAGDLTTA-PPSCAVARGMSEATDKTNPLSPSTSPRHEQLGSCPEFRMTMSSGAAATVPAPTRASGGAAVGAGGVVPPPLPHRAIVPPALEKTDERGVADATKDSGGLAASTDQSDETPSNIVQEVAEDVAEGVADMMQVIRGVFGRGESDDGDDADPTPXXXXKAVYGGGGDSGTPEQKDFLVSAVLSR 286 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17583.1 >prot_E-siliculosus-1a_M_contig96.17583.1 ID=prot_E-siliculosus-1a_M_contig96.17583.1|Name=mRNA_E-siliculosus-1a_M_contig96.17583.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1280bp VPKLPESDDSSAKVDYETFSSSAGVGATLNATVIAAGHERPEPSKIAVSNback to top mRNA from alignment at E-siliculosus-1a_M_contig96:307488..315158- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17583.1 ID=mRNA_E-siliculosus-1a_M_contig96.17583.1|Name=mRNA_E-siliculosus-1a_M_contig96.17583.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7671bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:307488..315158- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:307488..315158- >mRNA_E-siliculosus-1a_M_contig96.17583.1 ID=mRNA_E-siliculosus-1a_M_contig96.17583.1|Name=mRNA_E-siliculosus-1a_M_contig96.17583.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7680bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:307488..315158- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |